BAC Information

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BAC

Clone NameMSMg01-475G18
Chromosome2 (Build37)
Map Location 131,813,158 - 131,813,299
singlet/doubletsinglet
Overlap genenone
Upstream geneAtrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d, Lamr1-ps1, Prnp, Prnd
Downstream geneRassf2, Slc23a2, LOC626513, LOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2, Prokr2, 1700026D11Rik, Prei4, LOC100043781, LOC383801, LOC668906, Chgb, 3300001M20Rik, Mcm8, Crls1, B430119L13Rik, 5830467P10Rik, LOC668908
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475G18.T7 (MSMg01no475_g18.b1)MSMg01-475G18.TJ (MSMg01no475_g18.g1)
ACCAG557252AG557253
length832782
length of high quality
(start - end)
159 (72 - 230)415 (77 - 491)
definitionCHROMAT_FILE: MSMg01no475_g18.b1 PHD_FILE: MSMg01no475_g18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:11 2005CHROMAT_FILE: MSMg01no475_g18.g1 PHD_FILE: MSMg01no475_g18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGG
AATTCCAGAATCCTTCCATGTAGCAACCTTCTAAATGACACCAAACATCC
CAAAAAGTCTTAGTGGCACCCAAACCTTAAACAAACCAATTCTAAATATT
AAGAACCTAGTGACATTCAGTATCCTAAATGGTCTCAAAAGAAAGTAAGA
GAGAAAGAGAGAGGGGGGGAGGGAGGGAGGNANNNNNNNCNANNNNNNNN
NNNNNNTTNNNNNNNNNNNNNCNCCCCCCCCCCCCCTTCCCCCCTCCCCT
CTCTCCCCCCCCCCCCCCCCTTTTTTTTTTTCTCNTCTCCTTTCCCCTTT
TTCCTTTTCCTTTTTTTTTTCTTCTCCTTCCTCCTCGGATTCCCCTCTTC
TTTCTTTTCTTCTTTTTTTTCCCCCTTTTTTCCCCCCTTTCCTTTCGTTC
TCTCCTTCCCCGTTTCTCTCTCCTTATTCTTATTTACTCCCCCTTCCTTT
CCTCTTTCCTCTCTCCTCTCTCTCGCCTTTTTCTCTTTTTCTTTCTCTCC
CTCCTCTTCTCTTACTCTCTTCCTTTCTTGATCCCCTTCTCACCTTTATT
CCCCTGCCGTTTTCTCACGCCCTTTTTCTTTTTCCTTCTTTTTCTTGTTT
TTCTTCTTCTCCCCCCCTGTTCTTCCCGTTTCCATTAATTATCCTTCTCT
TTACCTCCTTTTTACTTCTCCTTCTATTTTTTTTTTTTTTCTCCCCCCTT
TGTTTCCCTCCGATTCATTCCTCGCTCCGTTTTTGTCGTTTGTTTATTCT
TTCTCCCTCTTTGATCGCCTTCTTTTTTTTTN
NCCCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACCAAAAT
GTGGTTCATCTACCCAATGCAGTACTACTCAGCTATGAAAAAGAATGAAT
TTCTGACATTCCCACCCCAATGGATGGGACCGGAGGGGTATCTTTCCGAG
CGGACGTTAAACTTTCTCCAAGGGACGTCTCCCAATTTGGCTTCCCCTGG
CAAGGCGGGTATTTACCCCTCACCCTTGGGATTTTCCCGATTACTAGAAC
AAATTTCTCCCTTACCATGTTGATTCCCCACCCCCATTCCCTTTTTTTTT
GCGGCTCCCTTTTTTCTCCCCTCCTATAAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_g18.b1 MSMg01no475_g18.b1 CHROMAT_FILE:
MSMg01no475_g18.b1 PHD_FILE: MSMg01no475_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:11 2005
         (159 letters)



>mm_chr2_131812973_131813531
          Length = 559

 Score =  267 bits (138), Expect = 2e-76
 Identities = 141/142 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcaaccttctaaatgacaccaaacatcccaaaaagtcttagtggcacccaaaccttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agcaaccttctaaatgacaccaaacatcccaaaaagtcttagtggcacccaaaccttaaa 268

                                                                       
Query: 61  caaaccaattctaaatattaagaacctagtgacattcagtatcctaaatggtctcaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 caaaccaattctaaatattaagaacctagtgacattcagtatcctaaatggtctcaaaag 208

                                 
Query: 121 aaagtaagagagaaagagagag 142
           ||||||||||||| ||||||||
Sbjct: 207 aaagtaagagagagagagagag 186


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space:    83201
Effective search space used:    83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)