Query= MSMg01no475_i16.b1 MSMg01no475_i16.b1 CHROMAT_FILE:
MSMg01no475_i16.b1 PHD_FILE: MSMg01no475_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:22 2005
(493 letters)
>mm_chr2_143948161_143949052
Length = 892
Score = 884 bits (457), Expect = 0.0
Identities = 478/487 (98%), Gaps = 5/487 (1%)
Strand = Plus / Minus
Query: 1 gactccagcaataacgctcacgcaaagctggctccagcggctctggtggggcacgcaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gactccagcaataacgctcacgcaaagctggctccagcggctctggtggggcacgcaccc 425
Query: 61 tctctgctctgcgttcctcccctttgctcttggtttctttccacttctctctctctttgt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 424 tctctgctctgcgttcctcccctttgctcttggtttctttccacttctctctctctctgt 365
Query: 121 tttctccttctcatgtgcacacacacacaaacctcatcctaccttgcttctatttacctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tttctccttctcatgtgcacacacacacaaacctcatcctaccttgcttctatttacctt 305
Query: 181 tattccactctattcccgtgccatgcaaaatggcagccacgcttctggttgtttccacgt 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tattccactctattcccatgccatgcaaaatggcagccacgcttctggttgtttccacgt 245
Query: 241 tttctgggta--tttctttccgcgatcctctagcaacttcacaaggtcccagattgggct 298
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tttctgggtagc---ctttccgcgatcctctagcaacttcacaaggtcccagattgggct 188
Query: 299 tccctgagtcaatcatagtgatcaagaagatagaagattctgattggttgccctgggtca 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tccctgagtcaatcatagtgatcaagaagatagaagattctgattggttgccctgggtca 128
Query: 359 atgcctgtagcagtgggtcagtcaggagaaagatagtggctagaaaggagtcatgggtgg 418
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 127 atgcctgtagcagtgggtcagtcaggagaaagatagtggctagaagggagtcatgggtgg 68
Query: 419 aggaacatccagagcagtcaacagaaggtggacaccgatgcatgtggagtgactgccgct 478
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 67 aggaacatccagagcagtcaacagaaggtggacacggatgcatgtggagtgactgccgct 8
Query: 479 gccacta 485
|||||||
Sbjct: 7 gccacta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 892
Length adjustment: 10
Effective length of query: 483
Effective length of database: 882
Effective search space: 426006
Effective search space used: 426006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no475_i16.g1 MSMg01no475_i16.g1 CHROMAT_FILE:
MSMg01no475_i16.g1 PHD_FILE: MSMg01no475_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:22 2005
(438 letters)
>mm_chr2_143766942_143767779
Length = 838
Score = 793 bits (410), Expect = 0.0
Identities = 431/438 (98%)
Strand = Plus / Plus
Query: 1 tctctgtagaccagacaggccatccacctgtctctttcaagtgctgggattaaaggtgtt 60
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 201 tctctgtagaccagacaggccagccacttgtctctttcaagtgctgggattaaaggtgtt 260
Query: 61 ctccaccaccacccagcttctactttacatgtgcatataagcatcagtgtgcagattcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccaccaccacccagcttctactttacatgtgcatataagcatcagtgtgcagattcat 320
Query: 121 tgacaattgacatgtgagtgcaggtgctctcagagtccagggcaccgtagtcacagctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgacaattgacatgtgagtgcaggtgctctcagagtccagggcaccgtagtcacagctgg 380
Query: 181 ctcgtttgtgtggttggaagtcatcctgtgtgtgagtgctggggactgatctgcggtcct 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcatttgtgtggttggaagtcatcctgtgtgtgagtgctggggactgatctgcggtcct 440
Query: 241 ctgacgatcataagcacgcttaaaccattcggccatgtctctagcctgtatttttacaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgacgatcataagcacgcttaaaccattcggccatgtctctagcctgtatttttacaat 500
Query: 301 gactggcctgcctttttgttgaaacaccaccttagtaatgtgtgttcacagactgaacaa 360
||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 501 gactggcctgcttttttgttgaagcaccaccttagtaacgtgtgttcacagactgaacaa 560
Query: 361 tggattgtatccagttactacctcacaaatccttcctcaatgcttactttcccttgtacc 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggattgtatccagttactagctcacaaatccttcctcaatgcttactttcccttgtacc 620
Query: 421 attcccctgcctcttcct 438
||||||||||||||||||
Sbjct: 621 attcccctgcctcttcct 638
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space: 355641
Effective search space used: 355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
