BAC Information

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BAC

Clone NameMSMg01-475I24
Chromosome2 (Build37)
Map Location 64,564,600 - 64,757,334
singlet/doubletdoublet
Overlap geneLOC667291, Grb14
Upstream geneFign, LOC620544
Downstream geneCobll1, LOC383705, 9330158F14Rik, Scn3a, Scn2a1, A330102K23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475I24.T7 (MSMg01no475_i24.b1)MSMg01-475I24.TJ (MSMg01no475_i24.g1)
ACCAG557360AG557361
length779756
length of high quality
(start - end)		254 (73 - 326)385 (84 - 468)
definitionCHROMAT_FILE: MSMg01no475_i24.b1 PHD_FILE: MSMg01no475_i24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:23 2005CHROMAT_FILE: MSMg01no475_i24.g1 PHD_FILE: MSMg01no475_i24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,757,081 - 64,757,334)(64,564,600 - 64,564,984)
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGNAACACCGCG
GAATTCTCAGAAACATCACAATTAAATTTATTTTAAGGACATTTCTAATA
ATCTCAACACTATTTTATTTGAATAGTTAAAATTTATGTTTAAAGAAAGA
ATATGTATATTTAAAATTAAGAATAAAAACAAGCCATGAATACAAATTCT
AAATATATACTGACCTAATTATACCTTCCATTGAGTTTTAATTTTTTTAA
ACTTTTTATTGATTCTTTGTGACTTTCCCATCATGCACCGTAATCCACTT
ATTTCCTCAGGTCTTCCTATCTGTCCTCTTGTTCTTGGAACCTCTGCACT
AAGAGAAAAGAAAATAAACATAGAAAACCAAAACAGAACCAAGCATAGAA
AACATCTCCTCATGGAAGCTGTAGTGTGGCACAACGTGTTCCACACTATA
TCCTTTTGTGGGGGTCACACACCTCGAATGGGCAGCACAGTAGAGCTGGC
TCTGGTGGTGTGGATGTGAGTGAGCTANCCCTGAAGTCATGAGTAGGAGA
ACTGGCCTTGCTTCTCACATTCGGTGGACTAACCAGGGGGTGGGTGAAAA
AAACAACTGGCCTGACAAACTTACTTCCCACCCAGCCCCCTTCCGGGGTT
TTAAATGCCCCTCTTTTTATTTTACACTCTTTTAAATCTGGGAACACCGC
TTGGCCCCCCCTTTTTTTCATTCCATATCTTAGAACACATGAAACTGGTT
TCCCCTTTTTTTTGCGTAATATTCCGTTG

TTTTTTCCCCAATATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAGCAAGACCGTTGA
CAGGATAATTGTGAGAAATGGAAGTCAGTTGAATACTGAGATCTCATGCC
CATTAATCCTTTAAAATGTCCAGCTGCTACAAGGTAAAGTCAGCATGGTT
ACAGGAGAAACAGATTCATTTTCATTCTTCTTAAGGGATATAGCATAAGA
AGAGAAAAAACATGCTCATATGAAAAGCATGTTCATTCTAAATAGCCTAG
ATTTGAATAGGTGGTGACTTAACTTAAAATTAAGCAGAAAATATATACAC
AAAGATGTAAACAATTGTATCATTCATCTACGTGATGGCTTGGCTCCCTT
TTAGCTTACCTGTGCAGCAGTAATTATAATCTGGGGACAGAAGTTAAACC
TTTCTGAACACTAAAACTTAAAGTTGCTGGCATGGAGTCACCAAGGGGGC
ATTTCCATCTCTGCTTGTGCAGGACAAGGGCAGAAATACTCCTCCTCCCA
TGGTTTCGCATGTTTAATTTTTGTGAGTTTTTCTAAAAAGAAACCCCCAC
GAACTTTTTTTCCCCCTCAATTTTTTCTTAGATTTTGTTTTGCTCCCTCC
GCTTTCCCCTCCCCCTGCCTTTCACCCCTCCCTCCCTTTCTTCCTCTTTT
GTTTTTTTTCGTTCCCCCCTTCCTTTTTTTCCCTTCCATTTTTCTTCCCC
TTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_i24.b1 MSMg01no475_i24.b1 CHROMAT_FILE:
MSMg01no475_i24.b1 PHD_FILE: MSMg01no475_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:23 2005
         (254 letters)



>mm_chr2_64756966_64757619
          Length = 654

 Score =  476 bits (246), Expect = e-139
 Identities = 252/254 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaatttattttaaggacatttctaataatctcaacactattttatttgaatagttaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 taaatttattttaaggacatttctaataatctcaacactattttatttgaatagttaaaa 310

                                                                       
Query: 61  tttatgtttaaagaaagaatatgtatatttaaaattaagaataaaaacaagccatgaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 309 tttatgtttaaagaaagaatatgtatatttaaaattaagaataaaaacaagacatgaata 250

                                                                       
Query: 121 caaattctaaatatatactgacctaattataccttccattgagttttaatttttttaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 249 caaattctaaatatatactgacctaattataccttccattgagttttaattttttaaaac 190

                                                                       
Query: 181 tttttattgattctttgtgactttcccatcatgcaccgtaatccacttatttcctcaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tttttattgattctttgtgactttcccatcatgcaccgtaatccacttatttcctcaggt 130

                         
Query: 241 cttcctatctgtcc 254
           ||||||||||||||
Sbjct: 129 cttcctatctgtcc 116


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no475_i24.g1 MSMg01no475_i24.g1 CHROMAT_FILE:
MSMg01no475_i24.g1 PHD_FILE: MSMg01no475_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:23 2005
         (385 letters)



>mm_chr2_64564400_64565184
          Length = 785

 Score =  729 bits (377), Expect = 0.0
 Identities = 383/385 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attagcaagaccgttgacaggataattgtgagaaatggaagtcagttgaatactgagatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attagcaagaccgttgacaggataattgtgagaaatggaagtcagttgaatactgagatc 260

                                                                       
Query: 61  tcatgcccattaatcctttaaaatgtccagctgctacaaggtaaagtcagcatggttaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatgcccattaatcctttaaaatgtccagctgctacaaggtaaagtcagcatggttaca 320

                                                                       
Query: 121 ggagaaacagattcattttcattcttcttaagggatatagcataagaagagaaaaaacat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ggagaaacagattcattttcattcttcttaagggatatagcataagaagagaaaaagcat 380

                                                                       
Query: 181 gctcatatgaaaagcatgttcattctaaatagcctagatttgaataggtggtgacttaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctcatatgaaaagcatgttcattctaaatagcctagatttgaataggtggtgacttaac 440

                                                                       
Query: 241 ttaaaattaagcagaaaatatatacacaaagatgtaaacaattgtatcattcatctacgt 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 ttaaaattaagcagaaaatatatacacaaagatgtaaacaattttatcattcatctacgt 500

                                                                       
Query: 301 gatggcttggctcccttttagcttacctgtgcagcagtaattataatctggggacagaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatggcttggctcccttttagcttacctgtgcagcagtaattataatctggggacagaag 560

                                    
Query: 361 ttaaacctttctgaacactaaaact 385
           |||||||||||||||||||||||||
Sbjct: 561 ttaaacctttctgaacactaaaact 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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