BAC Information

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BAC

Clone NameMSMg01-475J21
Chromosome2 (Build37)
Map Location 63,691,302 - 63,862,810
singlet/doubletdoublet
Overlap geneFign
Upstream geneKcnh7, EG667257
Downstream geneLOC620544, LOC667291, Grb14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475J21.T7 (MSMg01no475_j21.b1)MSMg01-475J21.TJ (MSMg01no475_j21.g1)
ACCAG557402AG557403
length794787
length of high quality
(start - end)		453 (46 - 498)383 (82 - 464)
definitionCHROMAT_FILE: MSMg01no475_j21.b1 PHD_FILE: MSMg01no475_j21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:27 2005CHROMAT_FILE: MSMg01no475_j21.g1 PHD_FILE: MSMg01no475_j21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,862,362 - 63,862,810)(63,691,302 - 63,691,684)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGTGATTTGCATACTGCATGAAATTTAGTTTAGCTTGACTTGG
CTCTTTCTCAACTTATGAAGAACTGAATATTCTCCGTATCTTGCAGGCAT
TATTAATTGATATGTTGTCAGCACTTCCATAAATATTTCTCTACTGCAGT
GATTTCCTTGCACTGGAATGTATGCTGACTCCTCAGCACATCCTCGACCT
ATGAGATCAGATACCGTCAGTGAGAAGGGACTGAGCCAAACTGCGCATCA
ATTCATTCCTGCTCGAATTTCATTGTTTTGCAATGAATGCTTTTATGAAC
ATTTAGAATAATATGGGACCAAAGAACCATTTAGACTACTCAGAGTTCTT
AAGAGAACCGATAAATCTCCGAAGAGGGAGTTGATTCTTTTCACATAATC
AGATTAAAATTTGCGACAAGTCAATTTTTCTGTAATCCTTTTTGAAAGCG
TGTTACATTTCCTTTCTGCTTTATTGGAAACTTTCCTTCCATTAATACAT
CAAAGTTGCATTTATGCCTACCCGAAATTATTTTCTTCCTAACTTTTAAA
AGCCCTGACTCAAAATTTGAGCCCTAAAAATTGGCCCCTCCACGAAAAAT
CCCCAAAACCTGGTAAAAACCATTCTCCCTAATTTCAGCGAAAAAAAAAC
AACCCCCTTATATTTTGTTACATTGATCCCCCGCTATATTCTCTTTTCCT
CCCCCACCGTTTTGGCCGGTTTTTTCCCCCCTTTTCCTCAAACC

NCCCCCCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGATCTAAAAATAAACC
TTCACTAGATAATGGAGTGCTGAAGGAGTGAGACAATTATGTAGAGCAAT
CACCCTGAGCGTTTGTAATTAACAATCAAATTACTTCCCCGAAGTGTCCA
ACAAGAGAACTTTTGTTGAACATTTCTATACGTGCCAAACTACCCCAAAG
TAATTGCGGAAATCAGTGAACTGTGGCGTGTGTCATCGTTTCTGAAACAC
CATGGCCAGTTTGGCGTTCACTGAGCTTCTGTCTGCCTCAGTAAGCCCAG
CTCAGATCCCTACAGTAGGGATTGACAGCAGATCTCTAATCACACAAAGT
GTATTATTTACATTTTTGATACATTGCACTACATTACGTTCTGTCCTGTC
CCATCTCATCACCAGGAGACAGAATGCTGGATAACCTCAGGTGACATGAT
GACAGGTCTCTCCTGGGAATGCATGTGCCCATACCACAACCCTTTTAAAT
CCTAAGGTAGACGGAAAAAAGNCCTATTTGTTTTGGGGCCCAAAAAGAAT
TTTGGAAGCTTCCCCGGGGGACCTTTTACCCAATCCTTTAAAAGCTCCGG
TCCTTTTCGGCAACCAACAACCTATAACCCTGCCCTGTTTGGGCCCACCT
TTTTTGGGAACAACCCTTCTCAAACCCTTTTTTTCCCCCCTTTTAATTGT
GCCCCTTCCCCTCTAACCCGCCTTCCCCCTAATACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_j21.b1 MSMg01no475_j21.b1 CHROMAT_FILE:
MSMg01no475_j21.b1 PHD_FILE: MSMg01no475_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:27 2005
         (453 letters)



>mm_chr2_63862158_63863010
          Length = 853

 Score =  814 bits (421), Expect = 0.0
 Identities = 442/449 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactgtgatttgcatactgcatgaaatttagtttagcttgacttggctctttctc 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gaattcactgtgatgtgaatactgcatgaaatttagtttagcttgacttggctctttctc 594

                                                                       
Query: 65  aacttatgaagaactgaatattctccgtatcttgcaggcattattaattgatatgttgtc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 593 aacttatgaagaactgaatattctccgtatcttgcaggcattattaattgatatgttgtt 534

                                                                       
Query: 125 agcacttccataaatatttctctactgcagtgatttccttgcactggaatgtatgctgac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 agcacttccataaatatttctctactgcagtgatttccttgcactggaatgtatgctgac 474

                                                                       
Query: 185 tcctcagcacatcctcgacctatgagatcagataccgtcagtgagaagggactgagccaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tcctcagcacatcctcgacctatgagatcagataccgtcagtgagaagggactgagccaa 414

                                                                       
Query: 245 actgcgcatcaattcattcctgctcgaatttcattgttttgcaatgaatgcttttatgaa 304
            ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 413 cctgcgcatcaattcattcctgctcgaatttcattgtgctgcaatgaatgcttttatgaa 354

                                                                       
Query: 305 catttagaataatatgggaccaaagaaccatttagactactcagagttcttaagagaacc 364
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 catttagaataatatggcaccaaagaaccatttagactactcagagttcttaagagaacc 294

                                                                       
Query: 365 gataaatctccgaagagggagttgattcttttcacataatcagattaaaatttgcgacaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gataaatctccgaagagggagttgattcttttcacataatcagattaaaatttgcgacaa 234

                                        
Query: 425 gtcaatttttctgtaatcctttttgaaag 453
           |||||||||||||||||||||||||||||
Sbjct: 233 gtcaatttttctgtaatcctttttgaaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no475_j21.g1 MSMg01no475_j21.g1 CHROMAT_FILE:
MSMg01no475_j21.g1 PHD_FILE: MSMg01no475_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:28 2005
         (383 letters)



>mm_chr2_63691102_63691884
          Length = 783

 Score =  725 bits (375), Expect = 0.0
 Identities = 381/383 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagatctaaaaataaaccttcactagataatggagtgctgaaggagtgagacaattatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagatctaaaaataaaccttcactagataatggagtgctgaaggagtgagacaattatg 260

                                                                       
Query: 61  tagagcaatcaccctgagcgtttgtaattaacaatcaaattacttccccgaagtgtccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagagcaatcaccctgagcgtttgtaattaacaatcaaattacttccccgaagtgtccaa 320

                                                                       
Query: 121 caagagaacttttgttgaacatttctatacgtgccaaactaccccaaagtaattgcggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagagaacttttgttgaacatttctatacgtgccaaactaccccaaagtaattgcggaa 380

                                                                       
Query: 181 atcagtgaactgtggcgtgtgtcatcgtttctgaaacaccatggccagtttggcgttcac 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcagtgaactgtggcgcgtgtcatcgtttctgaaacaccatggccagtttggcgttcac 440

                                                                       
Query: 241 tgagcttctgtctgcctcagtaagcccagctcagatccctacagtagggattgacagcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagcttctgtctgcctcagtaagcccagctcagatccctacagtagggattgacagcag 500

                                                                       
Query: 301 atctctaatcacacaaagtgtattatttacatttttgatacattgcactacattacgttc 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atctctaatcacacaaagcgtattatttacatttttgatacattgcactacattacgttc 560

                                  
Query: 361 tgtcctgtcccatctcatcacca 383
           |||||||||||||||||||||||
Sbjct: 561 tgtcctgtcccatctcatcacca 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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