BAC Information

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BAC

Clone NameMSMg01-475L03
Chromosome2 (Build37)
Map Location 48,190,740 - 48,191,127
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383691, LOC100041457, LOC383692, Acvr2a, Orc4l, LOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475L03.T7 (MSMg01no475_l03.b1)MSMg01-475L03.TJ (MSMg01no475_l03.g1)
ACCAG557461AG557462
length779758
length of high quality
(start - end)
491 (53 - 543)388 (82 - 469)
definitionCHROMAT_FILE: MSMg01no475_l03.b1 PHD_FILE: MSMg01no475_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:33 2005CHROMAT_FILE: MSMg01no475_l03.g1 PHD_FILE: MSMg01no475_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAAT
CCGCGGAATTCTGTAAATGTTCCCATTTACTGTATTCATTCCTCTGTTGA
GGAACATCTGGGTTCTTTCTAGCTTTTTGCTATTATAAATAAAGCTACTA
TGAACATAGTAGAGCATGTGTCCTTATTACAAGTTGGAGCATCTTCTGGG
TATATGCCCAGGAGTGGTATTGCTGGATCTTCTGGTAGAACTATATCCAA
TTATCTGAGGAACTGCCAAACTGATTTCCAGAGTGGTTGTACCAGCTTGC
AATCCCACCAAAAATGGAGGAATGTTCATCTTTCTCCACATGCTCGCCAG
CATCTGATGTCACCTGAGTTTTAAGGAGTTACAGAGACAAAGTTTGGAGC
TGAGACAAAAGGATGGACCATCTAGCGACTGCCATATCCAGGGATCCATC
CCATAATTAGCCTCCAAATGATGACACCATTGCATACACTAGCAAGTGTT
GGCAGAAAGGACCCTGATATACCTGTCTCTTGTGAGACTATGCCGGGGCC
TAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGAGCACAT
GGCCCCCAATGGAGGAGCTTGAGAAAGTATTCTAGCAACTAAGGGGATCT
GCCAACCCTGTAGTGTGCCCCGCTTTTATGAACTAACCAGTAACTCCGGG
AGTTTCTGGACTCTAATCTGCGCTCAGGCTCCCCACCCACTGGTCTTACC
CGCCCCTTCTCTGGTAAGAAATATTCTCC
CCCCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAGCAATTCAGTGCAGG
TTGCAGGTTTCTTTGTACTAGGATTAGATTAGTGTTGCAGTTAGATATCC
TGGCTTCTGAAATCTTAGTCATGTTCCAAGAAGCTTTATAAACGATGCAT
GGAAGGACAATAGAAATAAGAACAATGGTTCAAGCAAATAGCACACTCCT
TGGGGGGCTGTATGGCATCTTGTATCTCAATATGGAAGCAGAAGGCAGTA
GAGTTGTTCAACTTGAAGAACTCCTCAAAATAGACTCCATGAATTAGCAC
GTTATAATCCACGACATCCACAGGGCAGGACTGTAAAAGAGTCACGTAGT
ATTCTTAGCAGAACGCTTAGATTATAGGTGTTGATATCTGTAATATCTTT
CAAAGTATTTTACAGTAGTTACGTCTCTGAGTCCCCCCAAATACATGGCC
AGGAAATAGAACAGACCATCTTACATTTGAGGTCACAGATGTTTCCTGCA
CAAAATGAAATTGTCCACCGCCCGGCATAAGCCGCTATTTACGCGTTCAC
TTTCCGGGCCCCTCCCCTAAACCTTTCCTTGCCCCCCCCCTTTTCCGACC
TCTCGACTCTTTTTTTTCCCCTATTCTCCGCGTTCCCCCTCCCTTCTCTA
TTCTTTCCCCGTTTCTCTCAACCCCTTTCCCCTGGTTCCCCCTTTCTCGT
TCTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_l03.g1 MSMg01no475_l03.g1 CHROMAT_FILE:
MSMg01no475_l03.g1 PHD_FILE: MSMg01no475_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:34 2005
         (388 letters)



>mm_chr2_48190540_48191327
          Length = 788

 Score =  727 bits (376), Expect = 0.0
 Identities = 385/388 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtagcaattcagtgcaggttgcaggtttctttgtactaggattagattagtgttgcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 agtagcaattcagtgcaggttgcaggtttctttgtactaggattagattagtgttgcagt 529

                                                                       
Query: 61  tagatatcctggcttctgaaatcttagtcatgttccaagaagctttataaacgatgcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tagatatcctggcttctgaaatcttagtcatgttccaagaagctttataaacgatgcatg 469

                                                                       
Query: 121 gaaggacaatagaaataagaacaatggttcaagcaaatagcacactccttggggggctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gaaggacaatagaaataagaacaatggttcaagcaaatagcacactccttggggggctgt 409

                                                                       
Query: 181 atggcatcttgtatctcaatatggaagcagaaggcagtagagttgttcaacttgaagaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atggcatcttgtatctcaatatggaagcagaaggcagtagagttgttcaacttgaagaac 349

                                                                       
Query: 241 tcctcaaaatagactccatgaattagcacgttataatccacgacatccacagggcaggac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tcctcaaaatagactccatgaattagcacgttataatccacgacatccacagggcaggac 289

                                                                       
Query: 301 tgtaaaagagtcacgtagtattcttagcagaacgcttagattataggtgttgatatctgt 360
           ||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||
Sbjct: 288 tgtaaaagagtcacgtagtattcttagcagaatacttagattatagttgttgatatctgt 229

                                       
Query: 361 aatatctttcaaagtattttacagtagt 388
           ||||||||||||||||||||||||||||
Sbjct: 228 aatatctttcaaagtattttacagtagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)