BAC Information

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BAC

Clone NameMSMg01-475O23
Chromosome2 (Build37)
Map Location 155,511,674 - 155,692,386
singlet/doubletdoublet
Overlap geneTrpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik
Upstream geneChmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b
Downstream geneGdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475O23.T7 (MSMg01no475_o23.b1)MSMg01-475O23.TJ (MSMg01no475_o23.g1)
ACCAG557645AG557646
length763751
length of high quality
(start - end)		212 (338 - 549)488 (80 - 567)
definitionCHROMAT_FILE: MSMg01no475_o23.b1 PHD_FILE: MSMg01no475_o23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:52 2005CHROMAT_FILE: MSMg01no475_o23.g1 PHD_FILE: MSMg01no475_o23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,511,674 - 155,511,885)(155,691,899 - 155,692,386)
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGACACACGC
GCGGAATCAACCAAGATTACCATGAACAACTTAAAAAGTCAAACAAAACA
CCAAGTTTTAGAATTGGGGTCATATAGAGCGCAGGGCAAACGTGAAAGCA
TGCAGTTAGAAGGCTCCACATGGTATGTGACATCTCATAAAGATGTCATT
TTCCCAGCCATGTCAGTCGCAGTGATGAACGTGGGGAGCAGCACACACAG
CGGGATTCCAGTAGGAAAAGGTGGGCAAGAGGAATGATCATGGAAATAAG
CTGGCTGAAAAGAGACTTTCTAGATTCTAGTTTCTGTGGTGAGCACGTGG
CTACATACACCTGTCAAGCCCCATAAATCACACACTAAACATGCTTCCCA
ATGGTATATAATACACGCTCAGCACACGTGAGGCCAGGGTTTAGTCTCCA
ACATGAAAAAAAGAAAAGCAAATTTTACTATGTATGCATTTGTACATCAA
CTAAAAACAACAAAACTACTTTTAATATCAAGGAAAACTATATTAAGGCA
GTAACTGTTAGACATACATGGCTCTATATAAACAGTAATTACTTCAGCAG
CAGAATGGACCTACTTGATACCACAGCCAGACCCGATATAATGGGAAAAA
TGGCAGACACAAAGGAAGTATATATGCCAACCTTTTAACGGAGGAGGAAA
AATAAAATTCCCTTTACTGGGACAAAATACCTCCCTAAAAAAACCAGTTT
ATTTATAAACGCC

NNNNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCAGTCTAATCTACAGA
GCAAGTTTCTGGCTGTCTTAAAAAAAAAAACAAAAAAACTAGAGAAAGAG
AGAAGAATTTGATAAGCCAGCTTGGGCTATGTGCCCATCTCCGAGGAGAG
GTCAGGATTTTAGGATCTGTAGTGTTCCAACTTACTTTGGAAGCAAAGTA
GACTCTTGACCTAAGGAAATGCAAAGAAGGAGGAAAGAACACCATTGTTA
GCATTGGAAGAACTAAGTCTTTTGAGTTCTTGGAGTTTGATGAGGGAAGC
AACCCAGGCAGTCTGTGAGGTAGTAACTTCTGAGTGACTCTGTTGGTCAT
ATATCAGTGAGTGTTCTTGCCAGGTGTCAGCTTTAACCTTTGTAACTGTA
TCCGTTCTTCACTGATGCTTCTCTGCTTTCATCTATACAATTCATTCTTA
AGTATGGTAAGCTTATAACAACAGCAACAACAACAATAATAATAACAACT
TTAATATTATTTCATGTATGTGGGCATTTTGCCTGCATGGGTATGTGCCC
CGATGCCTGTGGAGCCCAAAGGGGAGTGGTGTATCCCCTCGAATTAGAAT
TATAACGGTGGGTAACCCTGCTTCAGGTCTCTCAAAAAAAAAACTCGCGG
TCTTTATCACTGGACGGATCTCTACGCGCCCTATAAAAATCTTTCGGACC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_o23.b1 MSMg01no475_o23.b1 CHROMAT_FILE:
MSMg01no475_o23.b1 PHD_FILE: MSMg01no475_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:52 2005
         (212 letters)



>mm_chr2_155511474_155512085
          Length = 612

 Score =  410 bits (212), Expect = e-119
 Identities = 212/212 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtgagcacgtggctacatacacctgtcaagccccataaatcacacactaaacatgcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtgagcacgtggctacatacacctgtcaagccccataaatcacacactaaacatgcttc 260

                                                                       
Query: 61  ccaatggtatataatacacgctcagcacacgtgaggccagggtttagtctccaacatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaatggtatataatacacgctcagcacacgtgaggccagggtttagtctccaacatgaa 320

                                                                       
Query: 121 aaaaagaaaagcaaattttactatgtatgcatttgtacatcaactaaaaacaacaaaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaagaaaagcaaattttactatgtatgcatttgtacatcaactaaaaacaacaaaact 380

                                           
Query: 181 acttttaatatcaaggaaaactatattaaggc 212
           ||||||||||||||||||||||||||||||||
Sbjct: 381 acttttaatatcaaggaaaactatattaaggc 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 612
Length adjustment: 9
Effective length of query: 203
Effective length of database: 603
Effective search space:   122409
Effective search space used:   122409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no475_o23.g1 MSMg01no475_o23.g1 CHROMAT_FILE:
MSMg01no475_o23.g1 PHD_FILE: MSMg01no475_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:52 2005
         (488 letters)



>mm_chr2_155691750_155692637
          Length = 888

 Score =  944 bits (488), Expect = 0.0
 Identities = 488/488 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggccagtctaatctacagagcaagtttctggctgtcttaaaaaaaaaaacaaaaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 aaggccagtctaatctacagagcaagtttctggctgtcttaaaaaaaaaaacaaaaaaac 578

                                                                       
Query: 61  tagagaaagagagaagaatttgataagccagcttgggctatgtgcccatctccgaggaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tagagaaagagagaagaatttgataagccagcttgggctatgtgcccatctccgaggaga 518

                                                                       
Query: 121 ggtcaggattttaggatctgtagtgttccaacttactttggaagcaaagtagactcttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ggtcaggattttaggatctgtagtgttccaacttactttggaagcaaagtagactcttga 458

                                                                       
Query: 181 cctaaggaaatgcaaagaaggaggaaagaacaccattgttagcattggaagaactaagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cctaaggaaatgcaaagaaggaggaaagaacaccattgttagcattggaagaactaagtc 398

                                                                       
Query: 241 ttttgagttcttggagtttgatgagggaagcaacccaggcagtctgtgaggtagtaactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ttttgagttcttggagtttgatgagggaagcaacccaggcagtctgtgaggtagtaactt 338

                                                                       
Query: 301 ctgagtgactctgttggtcatatatcagtgagtgttcttgccaggtgtcagctttaacct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctgagtgactctgttggtcatatatcagtgagtgttcttgccaggtgtcagctttaacct 278

                                                                       
Query: 361 ttgtaactgtatccgttcttcactgatgcttctctgctttcatctatacaattcattctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ttgtaactgtatccgttcttcactgatgcttctctgctttcatctatacaattcattctt 218

                                                                       
Query: 421 aagtatggtaagcttataacaacagcaacaacaacaataataataacaactttaatatta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 aagtatggtaagcttataacaacagcaacaacaacaataataataacaactttaatatta 158

                   
Query: 481 tttcatgt 488
           ||||||||
Sbjct: 157 tttcatgt 150


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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