BAC Information

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BAC

Clone NameMSMg01-476A02
Chromosome2 (Build37)
Map Location 6,055,053 - 6,055,337
singlet/doubletsinglet
Overlap geneLOC634939
Upstream geneCcdc3, LOC100040292, Camk1d, LOC666599, Cdc123, Nudt5, Sec61a2, Dhtkd1, Upf2, LOC100040343, 5430407P10Rik
Downstream geneEchdc3, 1700014B07Rik, Usp6nl, LOC100040387, Cugbp2, LOC100040659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476A02.T7 (MSMg01no476_a02.b1)MSMg01-476A02.TJ (MSMg01no476_a02.g1)
ACCAG557698AG557699
length749767
length of high quality
(start - end)
284 (330 - 613)323 (78 - 400)
definitionCHROMAT_FILE: MSMg01no476_a02.b1 PHD_FILE: MSMg01no476_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:58 2005CHROMAT_FILE: MSMg01no476_a02.g1 PHD_FILE: MSMg01no476_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:58 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCG
GAATTCTAAATCCATACACTCTCCTCTTCCTGGGCGAGGTTAAGAAAAGC
TTGTTTATAATAGTCTTTTTGCCAACCTGGATTCTACCCTGTGGGCAGGT
CCGACTTGGTGCTGTCTCAGACCACTGGATTAGGCATTGCTGATGAAAAG
TGTGGCCACAGTGGATGGCAGCCATGTCACGGGAGTGATCGAAGAAGTCG
GAGCAGATAGTGCACAGAGCGCGGATAGGCATGATGGCTCGACTCAAGCA
GCCCAGAAAGCCAGCTGCCGATTATTTATACAGTTTGGTGGCCGAACCCG
CCGCCGCTCTGGTTCCTTCAAATTTTGCTCCACCGCACGACTTCCGGGAG
TGAACCGGAAGGAATAACAAACCCACGCCTGAGTGCTTCCCTCTGATTGG
ACAAACTTCTAGGCAAGCATTATTATCCTCCTCTTTCTGAACCAAATCCA
GACGAGGATCTAATCGGATACTTCCCCGATCCTTGGTGAGAAAAGAGCCA
TGCTTTTCCTTTCTATTGGTTTTTTTTTCCCCTTTTTTTCTTTTTCGCTC
TCCTCTCTTAAACTTTTGTCTCATATTGTGCTAAATGTGCATGCATTTAT
CCTAAGCGCGTTTTCACAGGTATATAAAATCAAATGTTGTGTGCCACCAT
AGTTCCCCCTTTGTTTTTATTACATCTTAACTAATGCTCGGTGCAATTT
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATT
TTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTA
TATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCT
TTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCT
TGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTT
ACAGAGCAAGCCATTGCTGTTCTGTTTTTGAATTTTTCCCCTGTACCCAT
ATCTTCAAGGCTTTTCAGTGAGTGTGTGTGTATGTGAGTGTGTGTTGCTT
CCTCTCACCCCCCTCTTCCCTTTCTCCTTCTTCCCTTTTTCCTGGCTTCC
GCCCGTTCTGCCCTTTCCTGTTTTCCCTTGTCGCCCCTGCCTTTACCCGC
TTTCCGTCCCCCTGCGTCCCCCTTTTGCTCTCCTGTCCCTTCCCCCTTTC
TGTGTGTCTTCGCCCTTTTCCCCCCTTTTTCCCCCTTTTTTTCTTCCCGT
TTTCTCCTTTTCCTTCTTCCTTTCCCTCTTTCCCCGTTTCCCCCCTGCCC
TCTGAGCTTTTCGGCCTTTCCCCCCGTCGTTCACTGCCCCCTCTTTTTTT
CCTCCCCTTCCTTTTCCCCCCCCCGTTCTCGTTTTTTCCGCGCCCCCTTT
TTTTCCCTTTTTCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_a02.b1 MSMg01no476_a02.b1 CHROMAT_FILE:
MSMg01no476_a02.b1 PHD_FILE: MSMg01no476_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:58 2005
         (284 letters)



>mm_chr2_6054853_6055539
          Length = 687

 Score =  489 bits (253), Expect = e-143
 Identities = 277/287 (96%), Gaps = 5/287 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagtttggtggccgaacccgccgccgc---tctggttccttcaaattttgctccaccgc 57
           ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||
Sbjct: 201 acagtttggtggccgaacccgccgccgccgctctggttccttcaaattttgctccaccgc 260

                                                                       
Query: 58  acgacttccgggagtgaaccggaaggaataacaaacccacgcctgagtgcttccctctga 117
           ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acggcttccgggagtgaaccagaaggaataacaaacccacgcctgagtgcttccctctga 320

                                                                       
Query: 118 ttggacaaacttctaggcaagcattattatcctcctctttctgaaccaaatccagacgag 177
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggacaaacttctaggcaaccattattatcctcctctttctgaaccaaatccagacgag 380

                                                                       
Query: 178 gatctaatcggatacttccccgatccttggtgagaaaagagccatgcttttcctttctat 237
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatctaatcggatagttccccgatccttggtgagaaaagagccatgcttttcctttctat 440

                                                          
Query: 238 tggtttttttttcccctttttttctttttcgctctcctctcttaaac 284
           ||||||||||  |||| ||||||||||||||||||||||||||||||
Sbjct: 441 tggttttttt--cccccttttttctttttcgctctcctctcttaaac 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 687
Length adjustment: 9
Effective length of query: 275
Effective length of database: 678
Effective search space:   186450
Effective search space used:   186450
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)