BAC Information

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BAC

Clone NameMSMg01-476A18
Chromosome2 (Build37)
Map Location 92,126,082 - 92,126,326
singlet/doubletsinglet
Overlap genePhf21a
Upstream gene1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1
Downstream geneGyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775, LOC100043205, Chst1, Syt13, LOC100042784, Trp53i11, C230071H18Rik, Tspan18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476A18.T7 (MSMg01no476_a18.b1)MSMg01-476A18.TJ (MSMg01no476_a18.g1)
ACCAG557730AG557731
length785787
length of high quality
(start - end)
245 (70 - 314)168 (70 - 237)
definitionCHROMAT_FILE: MSMg01no476_a18.b1 PHD_FILE: MSMg01no476_a18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:01 2005CHROMAT_FILE: MSMg01no476_a18.g1 PHD_FILE: MSMg01no476_a18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAACAGGATCCGCGGAAT
TCCAGGGTGACCACCAAACATGTCACAGGATATTTGCTCTACAGACCCAG
CATGTGTAAATGAAATTTCATGTTGGGCATGTCAGGCAGAACAGAAGACA
CTAGGAAATGTCACAGCAGGTGCTGCAAACCCAGGAAAAGTAATCATAGT
CCAGTCAGAATGTTACTAAACAGCAGAACTGCCCATTCTCTCATGCTTAT
TCATGGAGAAGTGAACCCCTGACTTCATGAGGTGACTCTACCTCTCAGTC
ACTCTAGGTTCTTGTCTTCTATGGCAAATGACCCTTTTCAAAATGATAGC
CAGCAATGAAGGTGAAAAGTTAGAACAGTGAACAAATGCGGCTTGGGGTG
GTGCCACCAGCGACTTCTGTGATGCTAACCTGAGCATCCATGAGCTGGCA
TCTCTGTTTCTTGTGTTACGCACTTCTTTCTGTCTAGACTATGGAGATGC
TTTCTTCTGTGCATTGTTGACTTACTGCAAAGTTTCTACCTAACTGGCAC
AGATTGATGTATAACCTCTTCTACCGTATTCTATTCACGGATTCCTTCTT
CTCCTCTTTAGCTGATTTTTGTGATTACCTTCTCTCCCGTCACGACTCGG
TCCTTTTTTTTTTTTCTCCCTCACTCCCCCCCCTTCTCCTTTTCTCCCCC
TTCTGTTTCTTCTTCCCCCTTTTTCTCTCCTTTCTATTTTCTCCATCCCC
TCTTTCCCGCATTTCTCGTATCCCCCCTCTCGTCN
ATGATGCGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTCCAGACACAATTCATTAAGATGGGAAGACCTGCCTACTGTGG
GTGGCAACATTCCCTGGGTCCTAGGCTGTATAAAAAGGATGTGAGCTGAG
TAAAATCATCCTGTTTCTTGACTGTGGGTGGAGTGTGTATGTGATTTCAC
CAGGAGAGACCTCTGTGAGCCAAAATGAACCTTTTACATTGCTCTTATTC
TTGAAGCCTGACCAACAGGTAAGCAACCCTCTGTCTAGGATAGCCAGGTC
TCAGAGCCCGATTTGTTGTTTGATCCTCGCAACTGCACACTCCACACCCT
GAATGTGTTTTATGCCACCTTTGGCAGACACCTTCCGTTGTCCATTCACT
CAGGCCCTGTTAGTCTATTTCCACTCTTGTTCCACCATACCTTCTGATCA
TCGCTTTTCTGCACTGCTTACTTATACCTGTGCCCCATCCATTATCCCCC
TTTCCTTACCCCTTTTTCTCCCTTATTTTTTACCCCTTCTCTGTCCCTTT
TTCCTCTTTTCCCCCCCCTATTCACCCTTTTTCCCCCTTTTTTTACTTCC
CCTTTTTTTCTTTTCTTTCTCCTTTCCTTCCTTTCCCCTTTTCTCCCCCC
CCCCCCCTTCTTTTTTTTTCTTTTTATCCCCCTCGTTTCCACTTTCCCCC
CCTGTTTTTTTCCTCTCCCTCCTTCTTCTCCCCTCCCCTTTTTCTTTTTT
TTCCTTCTCCCCCCTCTTTTTCCCCCTCCCTCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_a18.b1 MSMg01no476_a18.b1 CHROMAT_FILE:
MSMg01no476_a18.b1 PHD_FILE: MSMg01no476_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:01 2005
         (245 letters)



>mm_chr2_92125882_92126526
          Length = 645

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtcacaggatatttgctctacagacccagcatgtgtaaatgaaatttcatgttgggca 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 atgtcacaggatatttgctctacagacccagcatgtgtaaatgaaattccatgttgggca 260

                                                                       
Query: 61  tgtcaggcagaacagaagacactaggaaatgtcacagcaggtgctgcaaacccaggaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcaggcagaacagaagacactaggaaatgtcacagcaggtgctgcaaacccaggaaaa 320

                                                                       
Query: 121 gtaatcatagtccagtcagaatgttactaaacagcagaactgcccattctctcatgctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaatcatagtccagtcagaatgttactaaacagcagaactgcccattctctcatgctta 380

                                                                       
Query: 181 ttcatggagaagtgaacccctgacttcatgaggtgactctacctctcagtcactctaggt 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcatggagaagtgaacccctgacttcatgaggtgactctacctctcagtcactctaggt 440

                
Query: 241 tcttg 245
           |||||
Sbjct: 441 tcttg 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)