BAC Information

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BAC

Clone NameMSMg01-476B18
Chromosome2 (Build37)
Map Location 158,185,213 - 158,185,451
singlet/doubletsinglet
Overlap gene9430008C03Rik
Upstream geneLOC100043678, Manbal, Src, Blcap, Nnat, Ctnnbl1, LOC100043681, Gm691, 2610036D13Rik, 2610304G08Rik, Tgm2, D630003M21Rik, Bpi, Lbp
Downstream geneA930034L06Rik, B230339M05Rik, LOC628935, BC054059, LOC545481, Slc32a1, Actr5, Ppp1r16b, 2310007D09Rik, Dhx35, LOC100043891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476B18.T7 (MSMg01no476_b18.b1)MSMg01-476B18.TJ (MSMg01no476_b18.g1)
ACCAG557778AG557779
length764792
length of high quality
(start - end)
247 (67 - 313)235 (72 - 306)
definitionCHROMAT_FILE: MSMg01no476_b18.b1 PHD_FILE: MSMg01no476_b18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:06 2005CHROMAT_FILE: MSMg01no476_b18.g1 PHD_FILE: MSMg01no476_b18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAATTTGCGGCCGCTAAAGGAATCACTTTTCAAAGAGGATCCGCGGAAT
TCAGTCTTGTCTCCATTTCTCTCTTTACCCGCCTAGATTCCCTCTTTTCT
TCCAGATTCCAAGATGCCTTCCAGGCTGGAACCCAGACATGAGAGCCTCA
GGCCGGCCTCAACAGGTATCTACACCAGGGGAGTGCAGAATGGTGGAGCC
TGTGATGGATGGACAGGCAGATGGACAGATGATGGACAGACAGATAGACT
AAGACTAATGGATGGATGGACCCACTGCCATCACTCACCGTCCAAAGCAG
GTCCTGGTACTGCTCCTTTTTGCACACCACTTCAGCTGCGCCCTCTGCCA
GCTGCTTTCCACCCTTGGTGAGCTTGGGAGGTCGCCCGCGGGGCAGGAAG
AGATTGGTGGCCATCACTGTAGAAACATTCCACAAGGTCATCTTGTTGTG
CTGCTCCTGGGCTGCCACCTTCCTGAGGAATTCCAGGAGTGCCTAAGGAA
GGACACAGACCCTGCCTTAAGTTCCAGCACAACTCTCTTTGTAGGAGTCT
GGGTAGGAAGGGGGCGGACCACAGCTATTGTCCATTGATGCTCAGCAGCC
AGTCTCTCACAGGGGCTGTCATCTCTCCGATGGTTAGTCCGCTTGCGTTG
TGTTTTTTTGAAGTTTTACTGTTGCTCCCCTTTTACTCATAAATATTCCG
GTTTATAAAAAGGGCCCTGCGCCCTCTTACCCCATACTGGTTAACACAAT
TTTTTTATGTATGG
TTGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGGAGGCAAAACGGCAAATTTGCTCCCT
CCTGGGCCTGTCAGGCTGTTTACCCAGTTGACACACGACAATGCCTTACA
GAAAGTGATTGCCCCTTGATCGTTCATTTGTTCAGTCAGAACCCTGCCTC
TTGACTAACAGAACACAGCAAGATGCATTCTAGAAGTCAAGCAACGGGAC
ATTTTCTACACGCTCTCAAGTGTCCTGAAGAAGTGACAACTGGGTGTGGA
GGCTGAGAAAGGATTTTATGGAAGCAGCCACCGTCTGAGCTCCCTACCAC
TGCTTCCCAGAAGTGCCAGAACGGCAGGCAGCGGTCAATGTGGGAAAGCA
CCAGGGTTTGGCAAGGACGAGTGCGGATCCTCCAAACACGGCGAAAGGCT
TTCCGAATCCTCTCCCTGCAGTATCAATGACCACGGCACAGGTTGCCCAC
AATCACTTTCGAATACAGGGGTAGAGGCCAAGGAATACTATGGCCCACAG
CTGGGTTATGTCTATCCTGGAAACATATTGACACATATTGCTCCAGTCTT
ACTAGCCCTTAACTGGATATAGGCCTGTCCCCCCTTTTGACCACCAATTG
TTTTCTTATCCCCTAGCTCTCCAATTACTCGTCCCTCCTATAATTTTTCC
ACTCTCTTATATAATCTTTCTTTCTCTCCACAATTCTTCCCATATATCAC
ACCCCTTTTCTCCCCCCCCTATTATTTTTCATCTTCCTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_b18.g1 MSMg01no476_b18.g1 CHROMAT_FILE:
MSMg01no476_b18.g1 PHD_FILE: MSMg01no476_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:07 2005
         (235 letters)



>mm_chr2_158185013_158185651
          Length = 639

 Score =  420 bits (217), Expect = e-122
 Identities = 232/239 (97%), Gaps = 4/239 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggaggcaaaacggcaaatttgctccctcctgggcct----gtcaggctgtttacccag 56
           ||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||
Sbjct: 201 aaggaggcaaaacggcaaatttgctccctcctgggcctccctgtcaggctgtttacccag 260

                                                                       
Query: 57  ttgacacacgacaatgccttacagaaagtgattgccccttgatcgttcatttgttcagtc 116
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 ttgacacacgacaatgccttacagaaagtgactgccccttgatcgttcatttgttcagtc 320

                                                                       
Query: 117 agaaccctgcctcttgactaacagaacacagcaagatgcattctagaagtcaagcaacgg 176
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 agaaccctgcctcttgactaacagaacacagcaagatgcattctagaagtcaagcaacag 380

                                                                      
Query: 177 gacattttctacacgctctcaagtgtcctgaagaagtgacaactgggtgtggaggctga 235
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacattttctacacggtctcaagtgtcctgaagaagtgacaactgggtgtggaggctga 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 639
Length adjustment: 9
Effective length of query: 226
Effective length of database: 630
Effective search space:   142380
Effective search space used:   142380
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)