GGGGCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATAGATAACACATTACCCAGCATTTACATAGAGATTGC
AAGTGAGAAACAGTTGCCTACCTTCTCCAGTTTCCAAACATTCTCTGGAC
AAAGCACATGAAGAGACAGTACTTCTTATGTGGTTTGTTGAAAGATTTAC
TCTTAATAGCTGTTTGGTTTAAGATCTAAATAGTTTATGGCCATTCAACT
TTATTATTAACAAATAAAATTTCTTTCTCCAATCCATCCTGCCTTATTTT
ATTCCAAGTTAATTAATTCACAAAATGGGAGAGTGTAACTTTTATTTTAG
AAGTACCATTTAGTGTTTGTAAGAGAGAGAGAAAATAAATTATCACACAC
ACACACAGAGTAAGCAACACAAGGAGGTAAAGAAATAATAGTCCAGAAAC
ATAGATCATTAAATATATTCTGTATCCAAAGCAAACTTTAAGGCAGGGGT
TCTCAACCTTCCTAATGTTGTGATCTTTCAATACAATTCTTCATGTAATG
GTAAGCCTCAAACAGATAACTGTTTTCATTGATACTTCACAGCTATAATT
TTGCTACTGCTATGAATTGGAATATAAACCTCTGTGGTTTTTCCAGGGAG
TTAAGCAGCCCCTGGGGAAAGGATCTTTTTGATTTCGTAACGGGGGTTTC
AACCCCCACGGTTATTAACCCCCGCTTTTAAGGCGTGGGAGGACCCTCCT
CTTG

TCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCAGTCTTAGAGCCTTGAT
CTGAAACATCTTCCTGTCTTTAGATTCTAATTGAAAGTAAGTTGGCTCTT
ATGACTTTTTTTTAGTACGTTTTTAAAAATTTTTTATTCATATTTTATTT
ATACTTCAAATGATATCCCTTTTCCCAGGTTCCTCTCCCCCCGAATACCC
CTACTACATCCCCCTCCACCTTCTATGAGGGTGTTCACCCACCCACTCAC
TCCCACCTCCCTTCCCTGCCAGTCCTTATTTGACATCAAGTCTTCACAGG
ACCAAGAACCTCTTTTCCCATCGATGCCCAACAAGGCCATCCTCTGCAAC
AGATGCAGGTGGAGCCATGGGTCCGACCATGTGTATTCTTTACTTGGTGG
TTTAGTTCCTGGAATCTCTGGTTGGTTGATAATGTTGTTTTTCCTGTGAT
GATGCAATTCCCTTCAACTCCTTCTGTTCTTTTCTCAACTTCTCTATTGG
GGACCTCTCACTCAGTTAAACGATTGGGTGCACGGCCCCCTCTCTGGACT
TGTAAGGCCCTTGCCCCTTTCCCCCCCGAAAATATTTTTCCCGCCTCTCC
TTTTTTTTTCCTCTTGTTTACACCCTTCTGCCCTCTCTCCCCTCTATACC
GATCTCCTGTTCCCCCCCTCTTTTCCCCCCTCC

Query= MSMg01no476_f04.b1 MSMg01no476_f04.b1 CHROMAT_FILE:
MSMg01no476_f04.b1 PHD_FILE: MSMg01no476_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:24 2005
         (480 letters)



>mm_chr2_47852532_47853411
          Length = 880

 Score =  891 bits (461), Expect = 0.0
 Identities = 473/477 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccatagataacacattacccagcatttacatagagattgcaagtgagaaacagt 63
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccatagaaaagacattacccagcatttacatagagattgcaagtgagaaacagt 263

                                                                       
Query: 64  tgcctaccttctccagtttccaaacattctctggacaaagcacatgaagagacagtactt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgcctaccttctccagtttccaaacattctctggacaaagcacatgaagagacagtactt 323

                                                                       
Query: 124 cttatgtggtttgttgaaagatttactcttaatagctgtttggtttaagatctaaatagt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttatgtggtttgttgaaagatttactcttaatagctgtttggtttaagatctaaatagt 383

                                                                       
Query: 184 ttatggccattcaactttattattaacaaataaaatttctttctccaatccatcctgcct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttatggccattcaactttattattaacaaataaaatttctttctccaatccatcctgcct 443

                                                                       
Query: 244 tattttattccaagttaattaattcacaaaatgggagagtgtaacttttattttagaagt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tattttattccaagttaattaattcacaaaatgggagagtgtaacttttattttagaagt 503

                                                                       
Query: 304 accatttagtgtttgtaagagagagagaaaataaattatcacacacacacacagagtaag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 accatttagtgtttgtaagagagagagaaaataaattatcacacacacacacagagtaag 563

                                                                       
Query: 364 caacacaaggaggtaaagaaataatagtccagaaacatagatcattaaatatattctgta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caacacaaggaggtaaagaaataatagtccagaaacatagatcattaaatatattctgta 623

                                                                    
Query: 424 tccaaagcaaactttaaggcaggggttctcaaccttcctaatgttgtgatctttcaa 480
           ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tccaaagcacactttaagacaggggttctcaaccttcctaatgttgtgatctttcaa 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)