BAC Information

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BAC

Clone NameMSMg01-476F14
Chromosome2 (Build37)
Map Location 180,026,481 - 180,026,913
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039413, Cdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135
Downstream geneGata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476F14.T7 (MSMg01no476_f14.b1)MSMg01-476F14.TJ (MSMg01no476_f14.g1)
ACCAG557962AG557963
length749784
length of high quality
(start - end)
432 (74 - 505)245 (73 - 317)
definitionCHROMAT_FILE: MSMg01no476_f14.b1 PHD_FILE: MSMg01no476_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:26 2005CHROMAT_FILE: MSMg01no476_f14.g1 PHD_FILE: MSMg01no476_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGA
ATTCTCTGTTTGCAGAAAAAGCCCATGCTTCATGCCAGCAGTGTAGGCTT
ATCTCTCGACCAGAGCTGAAGTTTGGACCCTGCAATTCTGTCCCGTTTCC
TTGGTCCCCAGGTCCTGCCCCAGCCAGTTGAATCCTAGCTCTTCTGTGAC
TTGGGTCACAATCTCTCCGGGCCATGGACTTGTCTGCACAGTATGCTTTG
TAGGCAGCTCAGAAGGAACCCTGAAGTGAGGTTGCAGCTAAAGCTTTTGC
CAGGGTCTACCTCATTATCTTTCAGCTGTGAGACCCTGCTTGGGGCTTGA
AGGATAGATAGGGAAGTGGTGTTAACCAGTGTTAACCTGTCAGTAACTTA
GCAGAGACTGCTTTCTCAGAGGTCAGTTCACACACACTGGCTCTGCAGCC
CAGCAGCCAGACTGATGTCCTGGCAGCTGTATTTATTTATAACCAATTGC
AACTGGGCTGGCCAGGGAATAAACAACGGAGCCAAGCTCTGAAATGGAAA
ACTCCTCGCTGATCCAGAGGCTGGGNTCTGATGTCCATGCCTCTGCTCCT
CGTGAGATGGCTCAGAATATGTGTTACAGAACAGGATTTCCCCCAATTTT
CTTCTTTGAAATGGGTTCCTGAGTGATGCGAATGTTCTCCTTTTGTTTGT
GGGCGCTCTCCTCTGTTCCCATCCCTTCTGTAATATAAACAATTGTCTA
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTACAGCACAATTCTAGGGAGACCAAACACAGTCCTGTTT
CCTCTATCCATGGAGTCTAGACAGCACTCATTTCTCCCAAGTGACTACAA
GCTTGGGTGTCCAGGGCCTTGATTGGGGCCAGTCATAGAGCCAGGGGCAA
CTACCCACATGGCTATCTGTGGTCTCTAACCCCTTCTGAGATTAGCCTGA
TGTCATGCTGCCTACTACAAATCCCACTATTAATAGAGATGATGCAGTGA
CCAACACCCCAGACACTTGCATGATCAGTTTATCAGACGGGACAGTGGGG
AAGGGAAGGTTTCCAGCCACTGCCCAGGAGTCTGCTCCAGACAGTCCTTT
CTCTAGGCAGAGTTGGTTCTATGTATCAATGTCATCAAGCCAGGTCCACT
TTCTCATGTTGCTGATTCCAGGGAAGCCAGACCAGGTAAGGTTGCTAGAG
CCCAACTGGTTGGCTCATTAGTCTTCAGACCAGTTCTTCCCGTACTGGTG
CAGACAGTAACTTCGTGGATAAGCCATAGCCGTGCCCCTCGCCACAGATT
GCGTGTATAATCGCCCGTTTCCCTTTCCACGCTATTCTGCCCAAAACCCC
CGGTACCTCCTTTTTTTTCCCTTAACGCACCCCTATCTATTCCACTTTGG
TTTTCACTTTCCCTCTTCTTTCCCTATCTTTCCTGTTTTTACCTCTTTTT
CCCCCCCCCCGTTTTTTTCTTCCCCTCCTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_f14.b1 MSMg01no476_f14.b1 CHROMAT_FILE:
MSMg01no476_f14.b1 PHD_FILE: MSMg01no476_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:26 2005
         (432 letters)



>mm_chr2_180026281_180027113
          Length = 833

 Score =  752 bits (389), Expect = 0.0
 Identities = 422/435 (97%), Gaps = 5/435 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgcttcatgccagcagtgtaggcttatctctcgaccagagctgaagtttggaccctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgcttcatgccagcagtgtaggcttatctctcgaccagagctgaagtttggaccctgc 260

                                                                       
Query: 61  aattctgtcccgtttccttggtccccaggtcctgccccagccagttgaatcctagctctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattctgtcccgtttccttggtccccaggtcctgccccagccagttgaatcctagctctt 320

                                                                       
Query: 121 ctgtgacttgggtcacaatctctccgggccatggacttgtctgcacagtatgctttgtag 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 ctgtgacttgggtcacaatctctccgggccagggacttgtctgcacagtatgctttgtag 380

                                                                       
Query: 181 gcagctcagaaggaaccctgaagtgaggttgcagctaaagcttttgccagggtctacctc 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagctcagaaggaaccctgaggtgaggttgcagctaaagcttttgccagggtctacctc 440

                                                                       
Query: 241 attat---ctttcagctgtgagaccctgcttggggcttgaaggatagatagggaagtggt 297
           | ||    ||  |||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct: 441 agtaggcact--cagctgtgagaccctgcttggggcttgatggataaacagggaagtggt 498

                                                                       
Query: 298 gttaaccagtgttaacctgtcagtaacttagcagagactgctttctcagaggtcagttca 357
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 499 gttaaccagtgttaacctgtcagtaacttaacagagactgctttctcagaggtcagttca 558

                                                                       
Query: 358 cacacactggctctgcagcccagcagccagactgatgtcctggcagctgtatttatttat 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cacacactggctctgcagcccagcagccagactgatgtcctggcagctgtatttatttat 618

                          
Query: 418 aaccaattgcaactg 432
           |||||||||||||||
Sbjct: 619 aaccaattgcaactg 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 833
Length adjustment: 9
Effective length of query: 423
Effective length of database: 824
Effective search space:   348552
Effective search space used:   348552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)