Query= MSMg01no476_m03.b1 MSMg01no476_m03.b1 CHROMAT_FILE:
MSMg01no476_m03.b1 PHD_FILE: MSMg01no476_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:58 2005
(496 letters)
>mm_chr2_143855240_143856135
Length = 896
Score = 542 bits (280), Expect = e-158
Identities = 301/312 (96%), Gaps = 9/312 (2%)
Strand = Plus / Minus
Query: 1 gagtcattaatatagttattatgaagactgttggtaacagaggaacactaagaatgaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gagtcattaatatagttattatgaagactgttggtaacagaggaacactaagaatgaact 248
Query: 61 taaacagtagcatgtccaatcacaattacgaaaacatttgcctataaaaaaaacggtcac 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 247 taaacagtagcatgtccaatcacaattacgaaaacatttgcctat-aaaaaaacggtcac 189
Query: 121 catcattaaggaaattcagggaaatacagattaaagccaacaaatcctcaccagaatggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 catcattaaggaaattcagggaaatacagattaaagccaacaaatcctcaccagaatggc 129
Query: 181 taaagtcaagagagcagccctactaagtgctgaccagaatgctagtcagccataatcttc 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 128 taaagtcaagagagcagccctactaagtgctgaccggaatgctagtcagccataatcttc 69
Query: 241 attctcactttg----ttttattggtggcttcctgtaaagttaaacatacacacttattc 296
|||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 attctcactttggaaa----attggtggcttcctgtaaagttaaacatacacacttattc 13
Query: 297 tacggacccaca 308
|| |||||||||
Sbjct: 12 tatggacccaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no476_m03.g1 MSMg01no476_m03.g1 CHROMAT_FILE:
MSMg01no476_m03.g1 PHD_FILE: MSMg01no476_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:58 2005
(246 letters)
>mm_chr2_143678001_143678646
Length = 646
Score = 458 bits (237), Expect = e-133
Identities = 243/245 (99%)
Strand = Plus / Plus
Query: 1 ttggtagaagctggtaacccagacagtggtcgattcattttccatcgttactgccctgga 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 ttggtagaagctggtaacccagacagtggtcgagtcattttccatcgttactgccctgga 260
Query: 61 cctcagtgcctcctgctctttcccacaggcaacgtcagaggccagtaaactgcacggtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcagtgcctcctgctctttcccacaggcaacgtcagaggccagtaaactgcacggtgt 320
Query: 121 gacccagcctttgaatgttttttattgtttttaagtaaagccgtgtacctagaaactgaa 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacccagcctttgaatgtttttcattgtttttaagtaaagccgtgtacctagaaactgaa 380
Query: 181 tcaatttaaactgttcaatttaaagaaaagggggagagtacggcttcaaagttcacttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaatttaaactgttcaatttaaagaaaagggggagagtacggcttcaaagttcacttct 440
Query: 241 tagag 245
|||||
Sbjct: 441 tagag 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
