BAC Information

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BAC

Clone NameMSMg01-476M18
Chromosome2 (Build37)
Map Location 121,248,060 - 121,248,481
singlet/doubletsinglet
Overlap genePdia3
Upstream geneGanc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2
Downstream geneEll3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476M18.T7 (MSMg01no476_m18.b1)MSMg01-476M18.TJ (MSMg01no476_m18.g1)
ACCAG558302AG558303
length754769
length of high quality
(start - end)
422 (68 - 489)442 (71 - 512)
definitionCHROMAT_FILE: MSMg01no476_m18.b1 PHD_FILE: MSMg01no476_m18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:01 2005CHROMAT_FILE: MSMg01no476_m18.g1 PHD_FILE: MSMg01no476_m18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACCATCTTCTCTAAGAACAGCCAAGTGCTTTTAACCAATGATCCATCTC
TCAAGTCCCCTTGCCCCTATACTGGTTTTATATACTTTAAGTACTTGGGC
CAGTAAGATGGCTAAGCATGTAAAGGGGCTTACTGCTAAGCCTAAGGACT
CACATTGGTCCATGCACACCTACCCACATAAACATGTAGTAAAATATATT
CCATATTTCTTCCTCGTGAACACACCGATGCTCACCTTTGCTAATGGGAC
TATTCCTTTTAATCTGGTTGCTGCAGCTTCATACTCAGGGGCAAGCCTCT
TGCAATGTCCACACCTATGTTAAAAAAAAAAAAGCCAGATTCTTAGTTCA
ACACAAACTTACTGATATTTTGATTCTCATATCATACTACCATATACCTT
TTTCTTTTTTCTAAAGACAGGCTCTTGTTACATAGTCCAGGCTGTGATCA
CCCTTTTCCACCTCCATTGCACTGACTGTAGGATGCTATATCAATTACTC
TACTACCAAATTATACCTGAGACTTCTGATATTTGAGTCCTGACCTGTTT
GCTCTGTTTTTTTGAGGTAGGTTTTTATCTGACACCTGGCCTGGAATTCA
ATGAGATTCTCCTGCCCCTGCCCCCCTGTGTTTGACACAATTGTTTGCAC
CCCCCCTTTTCGACGACAATTTCTCGACCTGTCTCCTCTTTTTGAAGCCA
CCCC
TAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTGACGCGGGTAAAAGGGCCAGCTGGGAT
GCCCCCAGAGCATGGGGACTAAGACTGTATCGATCCACAGGGACCGACCC
GGTGACCCTGTTCTCTTTGACCCGCCAGGTCCTCAATGTAGGACCCCGCG
TCCCCATTGGGCCTAATCCCGTGATCACTGAACAGCTACCCCCCTCCCAA
CCTGTGCAGATCATGCTCCCCAGGCCTCCTCATCCTCCTCCTTCAGGCGC
GGCCTCTATGGTGTCTTTTTCTCCCCCGCCTTCTCAACAACCTGGGACGG
GAGACAGGCTGCTAAACCTGGTAGAAGGAGCTTACCAAGCACTCAACCTC
ACCAGTCCCGACAAAACCCAAGAGTGCTGGCTGTGTCTGGTATCGGGACC
CCCCTACTACGAAGGGGTGGCCGTCCTAAGAACTTACTCCAACCATACCT
CTGCCCCGGCTAACTGCTCCGTGACCTCCCAACACAAGCTGACCCTGTCT
GAAGTGATCGGGCAGGGACTCTGCGTATGATCAGCCTCTATAACCCATCA
GGTCCTGTGTTATACCACCCATAACATGATTCACGGTTCCCACTATTTGG
CCTCTCTTTTCGGGTATTTTTGGTTCTTGCAATAACCGGTCTTCATCTCC
TGTCTATTTATTATTGCTGCCTAACTTTAACCTTTTTTCAACGCCCCCCT
GTTTTGACCTTTTGCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_m18.b1 MSMg01no476_m18.b1 CHROMAT_FILE:
MSMg01no476_m18.b1 PHD_FILE: MSMg01no476_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:01 2005
         (422 letters)



>mm_chr2_121247728_121248549
          Length = 822

 Score =  801 bits (414), Expect = 0.0
 Identities = 420/422 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagccaagtgcttttaaccaatgatccatctctcaagtccccttgcccctatactggtt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 754 acagccaagtgcttttaaccaatgatccatctctcaagtccccttgcccccatactggtt 695

                                                                       
Query: 61  ttatatactttaagtacttgggccagtaagatggctaagcatgtaaaggggcttactgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ttatatactttaagtacttgggccagtaagatggctaagcatgtaaaggggcttactgct 635

                                                                       
Query: 121 aagcctaaggactcacattggtccatgcacacctacccacataaacatgtagtaaaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 aagcctaaggactcacattggtccatgcacacctacccacataaacatgtagtaaaatat 575

                                                                       
Query: 181 attccatatttcttcctcgtgaacacaccgatgctcacctttgctaatgggactattcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 attccatatttcttcctcgtgaacacaccgatgctcacctttgctaatgggactattcct 515

                                                                       
Query: 241 tttaatctggttgctgcagcttcatactcaggggcaagcctcttgcaatgtccacaccta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tttaatctggttgctgcagcttcatactcaggggcaagcctcttgcaatgtccacaccta 455

                                                                       
Query: 301 tgttaaaaaaaaaaaagccagattcttagttcaacacaaacttactgatattttgattct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tgttaaaaaaaaaaaagccagattcttagttcaacacaaacttactgatattttgattct 395

                                                                       
Query: 361 catatcatactaccatatacctttttcttttttctaaagacaggctcttgttacatagtc 420
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 394 catatcatactaccatatacctttttcttttttctaaagacagggtcttgttacatagtc 335

             
Query: 421 ca 422
           ||
Sbjct: 334 ca 333


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)