BAC Information

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BAC

Clone NameMSMg01-476O12
Chromosome2 (Build37)
Map Location 99,682,517 - 99,682,839
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621386
Downstream geneLOC668702, LOC100042907, LOC241572, LOC668705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476O12.T7 (MSMg01no476_o12.b1)MSMg01-476O12.TJ (MSMg01no476_o12.g1)
ACCAG558385AG558386
length743748
length of high quality
(start - end)
518 (66 - 583)324 (326 - 649)
definitionCHROMAT_FILE: MSMg01no476_o12.b1 PHD_FILE: MSMg01no476_o12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:10 2005CHROMAT_FILE: MSMg01no476_o12.g1 PHD_FILE: MSMg01no476_o12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTACCTCTGAGCCCCATTTTTTATTCGGGTTATTTGATTT
TCTGGAGTCCACCTTCTCAAGTTCTTTATATATATTGGATATAAGTCCCC
TATGTGATTTAGGATAGGTAAAGATCCTTTCCCAACTTGGTAGCCTTTTT
GTCTTATTGATCATGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAG
GTCCCATTTGTCAATTCTCGATCTTACAGCACGAGCCATTGCTGTTCTAT
TCAGGAATTTTTCCGTCTGTCCATATCTTTGAGGCTTTTCCCCACTTTCT
CCTCTATAAGTTTCAGTGTCTCTGGTTTTATTTGGATTTCTTGATCGACT
TANATTTGACCTTAGTACAAGGAGATAGGAATGGATCGATTCACATTCTT
CTAAATGATAACCTCCAGTTGTACCAGCACCATTTGTTGAAAATGTAGTC
TTTTTTCCACTGGATGACTTTTAGGTCCCTTGTCAAAGATCAAGTGACCA
TAGGTATGTGGGTTCATTTCTAGGTCTTCAATTCTATTCCCTTGGTCAAC
TTGTCTGCTGCTATACCAGTACCATGCAGTTTTTAACACTATTGCTCTGC
ACAATAGCTCCAGGTCTAGCTTACCGATTCCATCAGAGGCCCTTTTATCC
TCGAGAAGAGTTCGCCATATCTCACTTTCTTGTGTTATTCCAN
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTACCAACACCAATCCATTTCTTGGCTTTAGCCTATATG
CTCATATTACATAAATTGGAAGAATTGGATTATTACAGGCAGTATCTGGC
AGACATCACCAGAGAGAAGTTCATTTATTCAAGCTCCTCTTCATCTAGTA
TTTAGAGTGTTGATAGATCATTTTGTTAGTGTAACACTCATCAAGGGCAG
TTGCCTCATTTTATTATGTTCAATGGATTTAGTATCTAATTAATTAAAAT
AGAATTAAATAATTTATTCCTTTGTCTCCTCTCTTTAACTCCTCCTATGT
ATCTCTCATGCTCCTTCTCAAATCCTTGGTCTCCTTTTCTTTTACACAGC
ACACATACACACACACACATAAACACACACATGTATATACATATATATGT
TATTTTTCAATTAAATATAATGTCAACTTTTCGAGTCCATTTAGTGTTGC
TTGCATGAATATTCTAGTATAGCTGATTACTTGGTATTAAATATCCATTT
AGGGTCCTCATGGATGGGAACATCTATTTTTCTCTCTCCCAGGAGTCATT
ACTTTCTGTAGCTCTTCATGTAAATGAGGGATGCTATAAGCTTTCTTTAA
TTCTTATTATAATGTTAGCTACTGCTATAATTGCTTAAGTTTGTTTAGGC
AGACATATCATTGACTAATGCACGGGTATGTTTCCTCATCCTATTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_o12.g1 MSMg01no476_o12.g1 CHROMAT_FILE:
MSMg01no476_o12.g1 PHD_FILE: MSMg01no476_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:10 2005
         (324 letters)



>mm_chr2_99682211_99682934
          Length = 724

 Score =  557 bits (288), Expect = e-163
 Identities = 315/326 (96%), Gaps = 5/326 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcctctctttaactcctcctatgtatctctcatgctccttctcaaatccttggtctcct 60
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ctcctctctttaa---ctcctatgtatctctcatgctccttctcaaatccttggtctcct 573

                                                                       
Query: 61  tttcttttacacagcacacat--acacacacacacataaacacacacatgtatatacata 118
           ||||||||||||| |||||||  ||||||||||||| |||| ||||||||||||||||||
Sbjct: 572 tttcttttacacaacacacatacacacacacacacacaaacgcacacatgtatatacata 513

                                                                       
Query: 119 tatatgttatttttcaattaaatataatgtcaacttttcgagtccatttagtgttgcttg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tatatgttatttttcaattaaatataatgtcaacttttcgagtccatttagtgttgcttg 453

                                                                       
Query: 179 catgaatattctagtatagctgattacttggtattaaatatccatttagggtcctcatgg 238
            ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 452 tatgaacattctagtatagctgactacttggtattaaatatccatttagggtcctcatgg 393

                                                                       
Query: 239 atgggaacatctatttttctctctcccaggagtcattactttctgtagctcttcatgtaa 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 atgggaacatctatttttctctctcccaggagtcattactttctgtagctcttcatgtaa 333

                                     
Query: 299 atgagggatgctataagctttcttta 324
           ||||||||||||||||||||||||||
Sbjct: 332 atgagggatgctataagctttcttta 307


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)