BAC Information

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BAC

Clone NameMSMg01-477D11
Chromosome2 (Build37)
Map Location 181,078,106 - 181,078,705
singlet/doubletsinglet
Overlap geneRtel1
Upstream geneEG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3
Downstream geneArfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477D11.T7 (MSMg01no477_d11.b1)MSMg01-477D11.TJ (MSMg01no477_d11.g1)
ACCAG558619AG558620
length729751
length of high quality
(start - end)
599 (70 - 668)395 (326 - 720)
definitionCHROMAT_FILE: MSMg01no477_d11.b1 PHD_FILE: MSMg01no477_d11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:35 2005CHROMAT_FILE: MSMg01no477_d11.g1 PHD_FILE: MSMg01no477_d11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGTCTCTAATATTGXXXXXXXXXXXXXXXXXXXXXXXTTTCXXXXXXXXX
XXXXXXXXXXXXGATTACCAGACTAGTTCCCCCAACTTAGCAAAATGGTA
TGTGATAAGAGGAAAACCTGACTCTAGAGTGTGAGTACATTTACATATGC
AGGTATATGTGAATGTGTGTAAGATGAATGCTCACTACATGTGTGACTGA
GATGAGCAAAGGGGGCTGGGGGGGGGGGCGGATTCCAATCTAGGAGCCAC
AAACTCTACTTCTGGCTGACCCTTCTCTGGCCTGACAAAATCTGACTGGC
TAGTTGTTTTTCTGTGCACATTCCCACATCCTGACAAAAACTCTTGGCAC
CTTTGGTTATGCAAGAAGCAGCTGTGAGATAAGCAACTCACCAGTCATTT
GTTCTGCTGCTGAGCAGCTTGCTAGCAAGGATCTAGCTCGCACAATACCA
GAGTGGGGTAGGGAAGGTACTAGGAGCCTTTGGAGCACTTGCCAAAGAAA
TTGCAAACCACTGGACAACAAAGTCTGGGTTCCAAAAGCATGGATAAGGA
AAGTATCTCCTTTATAAACAGAGTAGAGAATAGTGTTCTGAGGAGGAGAG
AGGTTGTCCTGCTCACTGGAGCCCTCTAGGTCTGGGAATAACAGTGCCTC
CTCTGTGCCTGCAGTTGAGGACGAGCCCACATGGGAAGAGTAGAGTAGAC
TCTTGGAAGGTGTTTCTGATGAAAGGCCC
NCCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAAGAAACAGACTGGGAGGA
AGAAGCAGCTCATTATTAGAAAAAAGGGTACCAGCCAGGTAAAGTGCTAG
CTAATCAGTTAAGGAAGCCAAAAGCGGCTGGCGAAGGCCAGTTTGCTGAT
TGGCCTCAGGGCAGTCGGCTTCAAGGTCCGCCCTATGCGGAGTCCCCGCC
CTGCGTAGTGCGTCAGCCCTGCGCAGAGAGACAATGCGCAGAGAGGCAGT
GCGCAGACTCATTCATTCCTCTTATAGGAACAAAGGAAAATACAACAGGC
ATTTCCAGTCTTTGAAGGAGCCGAGGGTGGGCGTGTCCACGCTCCGGTAG
AATACGTACAGATTAAAGAACTCGCCGAGTCGGTCCGTAAATACGGAACC
AATGCTAATTTTACCTTGGTGCAGTTAGACAGGCTCGCCGGCATGGCACT
AACTCCTGCTGACTGGCAAACGGTTGTAAAAGCCGCTCTCCCTAGTATGG
GCAAATATATGGAATGGAGAGCTCTTTGGCATGAAGCTGCACAAGCGCAG
GCCCGAGCAAACGCAGCTGCTTTGACTCCAGAGCAGAGAGATTGGACTTT
TGACTTGTTAACGGGTCAGGGAGCTTATTCTGCTGATCAGACAAACTACC
ATTGGGGAGCTTATGCCCAGATTTCTTCCACGGCTATTAGGGCCTGGAAN
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_d11.b1 MSMg01no477_d11.b1 CHROMAT_FILE:
MSMg01no477_d11.b1 PHD_FILE: MSMg01no477_d11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:35 2005
         (599 letters)



>mm_chr2_181077906_181078905
          Length = 1000

 Score = 1122 bits (580), Expect = 0.0
 Identities = 595/600 (99%), Gaps = 1/600 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agactagttcccccaacttagcaaaatggtatgtgataagaggaaaacctgactctagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 agactagttcccccaacttagcaaaatggtatgtgataagaggaaaacctgactctagag 741

                                                                       
Query: 61  tgtgagtacatttacatatgcaggtatatgtgaatgtgtgtaagatgaatgctcactaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgtgagtacatttacatatgcaggtatatgtgaatgtgtgtaagatgaatgctcactaca 681

                                                                       
Query: 121 tgtgtgactgagatgagcaaagggggct-gggggggggggcggattccaatctaggagcc 179
           |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 680 tgtgtgactgagatgagcaaagggggctgggggggggggggggattccaatctaggagcc 621

                                                                       
Query: 180 acaaactctacttctggctgacccttctctggcctgacaaaatctgactggctagttgtt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acaaactctacttctggctgacccttctctggcctgacaaaatctgactggctagttgtt 561

                                                                       
Query: 240 tttctgtgcacattcccacatcctgacaaaaactcttggcacctttggttatgcaagaag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttctgtgcacattcccacatcctgacaaaaactcttggcacctttggttatgcaagaag 501

                                                                       
Query: 300 cagctgtgagataagcaactcaccagtcatttgttctgctgctgagcagcttgctagcaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cagctgtgagataagcaactcaccagtcatttgttctgctgctgagcagcttgctagcaa 441

                                                                       
Query: 360 ggatctagctcgcacaataccagagtggggtagggaaggtactaggagcctttggagcac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggatctagctcgcacaataccagagtggggtagggaaggtactaggagcctttggagcac 381

                                                                       
Query: 420 ttgccaaagaaattgcaaaccactggacaacaaagtctgggttccaaaagcatggataag 479
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 380 ttgccaaagaaattgcaaaccactgggcaacaaagtctgggttccaaaagcatggataag 321

                                                                       
Query: 480 gaaagtatctcctttataaacagagtagagaatagtgttctgaggaggagagaggttgtc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gaaagtatctcctttataaacagagtagagaatagtgttctgaggaggagagaggttgtc 261

                                                                       
Query: 540 ctgctcactggagccctctaggtctgggaataacagtgcctcctctgtgcctgcagttga 599
           |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 260 ctgctcactggagccctctaggtctgggaataacagtgcctcctctgtccctgtagttga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 1000
Length adjustment: 10
Effective length of query: 589
Effective length of database: 990
Effective search space:   583110
Effective search space used:   583110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)