NGTTTACGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCAAGACAAGAACACAAAAGCCAATGACTGGGGCAGTT
GGAGTAGCCAACAAGTTTCTGGAACATTTACTTCCCCAGAAATACATCAT
CTACAAAGATTCCACAAAATTCTAATATCATTATTAGCAATATACTTCAC
GTAGTCATTCTATAAAAGTTCAATATCTGTCATATTAGTTACTAAATATA
TGGTGAGTATTTTCAAAAAGTATTGAGAGCTAGGGTATAATCTATTTGAG
TAGAATTTGAGGTCCTGAGTTCATCCCTAGCACTTCACAAAAGAATTGAT
TTGCTTCAAGAGCTATCAGTCCTCATTAGGGTGGTATTTGAATTGAATGG
AGTGCCCTAATGCCCACACTTGTACCCAGAGTGGCTGTGTAAAGTCTCTT
GACATGTGGCTTCGTCGGCAACTACATTTCCCTACCTTTGCTCCCAAAGT
AATCAACATTAAGTAATAATATATTTAAAGTGTTGCCTGAACTAATAAAC
AGAGGTGGAAAGGAAATAAAATACAAGACTGGCCAACCCAAGACAAAGAT
TGTAGAATTTGCAAAATAAAGGAGTTTAAAAATATGATGTGTTATTATAT
AGCAGTATGTTAAAAATACGACATTTGGAAAAAGACATATAAACAAAGAG
CAAATTTGACAAGCCATGTGATTTACTTAGCTGACTGTAGCN

NNNCCCGATGCTGTGGGAGGCCTGGCGGCCGCCTGTTCAAAAATGTAGGT
GAACTATAGAAGTTCTGAGGAATTCTCTGTTTAGCTTTGAATCCCATTTT
TAAAATAGGGTTATTTGGTTCTCAGGATCTAACTTCTTGAGTTCTTTGTA
TATATAGGATATTAGCCCTATATCTGAAGTGAGATTGGTAAAGATCTTTA
CCCAATCTGTTGTTTGCTGTTTTGTCCCATTTACAGCATCCTTTTCCTTA
CATAAGCTTTGCAATTTTATGAGGTCCCATTTGTGGATTCGTGATCTTAC
AGCAAAAGCCATTGGTGTTCTTTTCAGGAAAAATTCCCTGTGCCCATGTG
TTCAAGGCTTTTCCCAGTTTCTCTTCTATCCGATTCAGTGCATCTGGTTT
TATGTGGAAGAGCTTGATCCACTTGGTCTTGAACTTTGTACAAGAAGATA
GGAATGGGTCAATCTGCATTTTTCTACATGCTGACCTCCAGTTGATCCAG
CACCATTTGTTGAAAATGCTGTGTTTTTGAAAGGATGGACTATCCAGAGA
CTACCCTATCCAGGGATCAATCCCATAATCAGCCACCAAACCCAGACACT
ATTCCATATGCCAGCAAGATTTTGCTGAAGGGACTCTGGTATAGCTGTCT
TGTATGAGGCTACGCCAGTGCATGGCAAATACAGGAGTGGATGCTCACAG
TCATCAATAAGAAGGAGACACAGGCCCCCA

Query= MSMg01no477_i01.b1 MSMg01no477_i01.b1 CHROMAT_FILE:
MSMg01no477_i01.b1 PHD_FILE: MSMg01no477_i01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:57 2005
         (690 letters)



>mm_chr2_105944504_105945593
          Length = 1090

 Score = 1324 bits (685), Expect = 0.0
 Identities = 685/685 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaagacaagaacacaaaagccaatgactggggcagttggagtagccaacaagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 gaattctcaagacaagaacacaaaagccaatgactggggcagttggagtagccaacaagt 830

                                                                       
Query: 65  ttctggaacatttacttccccagaaatacatcatctacaaagattccacaaaattctaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 ttctggaacatttacttccccagaaatacatcatctacaaagattccacaaaattctaat 770

                                                                       
Query: 125 atcattattagcaatatacttcacgtagtcattctataaaagttcaatatctgtcatatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 atcattattagcaatatacttcacgtagtcattctataaaagttcaatatctgtcatatt 710

                                                                       
Query: 185 agttactaaatatatggtgagtattttcaaaaagtattgagagctagggtataatctatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 agttactaaatatatggtgagtattttcaaaaagtattgagagctagggtataatctatt 650

                                                                       
Query: 245 tgagtagaatttgaggtcctgagttcatccctagcacttcacaaaagaattgatttgctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tgagtagaatttgaggtcctgagttcatccctagcacttcacaaaagaattgatttgctt 590

                                                                       
Query: 305 caagagctatcagtcctcattagggtggtatttgaattgaatggagtgccctaatgccca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 caagagctatcagtcctcattagggtggtatttgaattgaatggagtgccctaatgccca 530

                                                                       
Query: 365 cacttgtacccagagtggctgtgtaaagtctcttgacatgtggcttcgtcggcaactaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 cacttgtacccagagtggctgtgtaaagtctcttgacatgtggcttcgtcggcaactaca 470

                                                                       
Query: 425 tttccctacctttgctcccaaagtaatcaacattaagtaataatatatttaaagtgttgc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tttccctacctttgctcccaaagtaatcaacattaagtaataatatatttaaagtgttgc 410

                                                                       
Query: 485 ctgaactaataaacagaggtggaaaggaaataaaatacaagactggccaacccaagacaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ctgaactaataaacagaggtggaaaggaaataaaatacaagactggccaacccaagacaa 350

                                                                       
Query: 545 agattgtagaatttgcaaaataaaggagtttaaaaatatgatgtgttattatatagcagt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 agattgtagaatttgcaaaataaaggagtttaaaaatatgatgtgttattatatagcagt 290

                                                                       
Query: 605 atgttaaaaatacgacatttggaaaaagacatataaacaaagagcaaatttgacaagcca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 atgttaaaaatacgacatttggaaaaagacatataaacaaagagcaaatttgacaagcca 230

                                    
Query: 665 tgtgatttacttagctgactgtagc 689
           |||||||||||||||||||||||||
Sbjct: 229 tgtgatttacttagctgactgtagc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)