TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTA
AAAGTTACAGAACCATGGNGAAAGAGATGTTTCAATAGTCAAATTTTTTA
ATTAAAAAAAAACAGGCAGAAGAAATTATTTTCTTTAACTTAACCCTGTA
TGTTTCAAAATACCTATGAAACTTTTGGGTTTTTTCTAATGTTTAAAATT
ATACTTATTGAATTGTGTGTATTCCTGGAGAGGTTCATAAGTGGAGGTCA
GGTGATGTTTGGATTAGTCAGTTCTCCCTTTATGCTATGTGAGTCTCATG
GATCCAACTCAGGTCATCAGGTTTGATCTCAAATGCCTCTACCTAATGAA
ACCTTTAGCTACCCCTTAAGGTGTTTTGTTTATTAGTTTGTTTTTTGTTT
TCTATTCATATTTCTGTACTTTTTATAATAGAAAGCAATAGCTATTAATG
TTATAATTGCTTTACCCAATTATACATGTAAGCTCTATGGTAGAACATTT
TCTAAATAACACCATCGATTTACTTATTTTTATATCAATCTTTAATTTAT
CCATGTGTCTCTCTGTCTGTTTAGTTGGTTATTCATAGAGAGGATACTTT
GCAGTAGGGGCTTTCTTGGAGCTTACAGACCATAAACTGTGAGTCTTATA
ATACAAATATGTGTCAAGAGGCTTGGTCTGTATTTTTATATTTTAAACTT
CAAATTTTATTTCANGATCAGCTGC

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTACTTCTATTTTGTGGA
ATAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGGTAGAAC
TCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTTGGTTGGGAGACTAT
TAATGACTGCTTCTATTTCTTTAGGGGATCTGGGACTGTTTTGATCGTTA
ACTTGATCCTGATTTAATTTTGGTACCTGGTATCTGTCTAGAAATTTGTC
CATTTCGTCCAGATTTTCCAGTTTTGTTGAGTATAGCTGTTTGTAGAAGG
ATCTGATGGTGTTTTGGATTTCTCCAGGATCTGTTGTTATGTCTCCCTTT
TCATTTCTTGTTTTGTTAATTAGGATGTTGTCCCTGTGCCCTCTAGTGAG
TCTAGCTAAGGGTTTATCTATCTTGTTGATTTTCTCAAAGAACCAACTCA
TCGTTTGCTTAATTCGTTGAATAGTTCTTCTTGTTTCCACTTGGTTGATT
TCACCCAGGAGTTTGATTATTTCCTGCTGTCTACTCCTCTTGGGTGAATT
TGCTTCCTTTTTTCTAGAGCTTTTAGATGTGTTGTCAAGCTGCTAGTATG
TGCTCTCTCCCGCTTCTTCTTGGAGGCACTCAGAGCTATGAGTTTCCCTC
TTAGAAATGATTTCCTTGTGTCCCATAGGTTTGGGTATGTTGTGGCTTCA
TT

Query= MSMg01no477_j20.b1 MSMg01no477_j20.b1 CHROMAT_FILE:
MSMg01no477_j20.b1 PHD_FILE: MSMg01no477_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:06 2005
         (648 letters)



>mm_chr2_98155142_98156189
          Length = 1048

 Score =  990 bits (512), Expect = 0.0
 Identities = 518/520 (99%)
 Strand = Plus / Minus

                                                                        
Query: 129  atgaaacttttgggttttttctaatgtttaaaattatacttattgaattgtgtgtattcc 188
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 atgaaacttttgggttttttctaatgtttaaaattatacttattgaattgtgtgtattcc 989

                                                                        
Query: 189  tggagaggttcataagtggaggtcaggtgatgtttggattagtcagttctccctttatgc 248
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988  tggagaggttcataagtggaggtcaggtgatgtttggattagtcagttctccctttatgc 929

                                                                        
Query: 249  tatgtgagtctcatggatccaactcaggtcatcaggtttgatctcaaatgcctctaccta 308
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 928  tatgtgagtctcatggatccaacttaggtcatcaggtttgatctcaaatgcctctaccta 869

                                                                        
Query: 309  atgaaacctttagctaccccttaaggtgttttgtttattagtttgttttttgttttctat 368
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868  atgaaatctttagctaccccttaaggtgttttgtttattagtttgttttttgttttctat 809

                                                                        
Query: 369  tcatatttctgtactttttataatagaaagcaatagctattaatgttataattgctttac 428
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808  tcatatttctgtactttttataatagaaagcaatagctattaatgttataattgctttac 749

                                                                        
Query: 429  ccaattatacatgtaagctctatggtagaacattttctaaataacaccatcgatttactt 488
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748  ccaattatacatgtaagctctatggtagaacattttctaaataacaccatcgatttactt 689

                                                                        
Query: 489  atttttatatcaatctttaatttatccatgtgtctctctgtctgtttagttggttattca 548
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688  atttttatatcaatctttaatttatccatgtgtctctctgtctgtttagttggttattca 629

                                                                        
Query: 549  tagagaggatactttgcagtaggggctttcttggagcttacagaccataaactgtgagtc 608
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628  tagagaggatactttgcagtaggggctttcttggagcttacagaccataaactgtgagtc 569

                                                    
Query: 609  ttataatacaaatatgtgtcaagaggcttggtctgtattt 648
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 568  ttataatacaaatatgtgtcaagaggcttggtctgtattt 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)