Query= MSMg01no477_l12.b1 MSMg01no477_l12.b1 CHROMAT_FILE:
MSMg01no477_l12.b1 PHD_FILE: MSMg01no477_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:14 2005
(608 letters)
>mm_chr2_22613503_22614511
Length = 1009
Score = 1054 bits (545), Expect = 0.0
Identities = 590/605 (97%), Gaps = 1/605 (0%)
Strand = Plus / Plus
Query: 5 gaattccatcttgtctctggctatgacacagagtgaatgcgggagtgcagtcttaaagag 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatcttgtccctggctatgacacagagtgaatgcgggagtgcagtcttaaagag 264
Query: 65 gagctacattatggagcaatcccaaattaaggagcctaaattcaacttgccacatccctt 124
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 265 gatctacattatggagcaatcccaaattaaggagcctgaattcaacttgccacatccctt 324
Query: 125 ggggaggaggtctgcacagacctgggatgcatttggaaaagcaaaaggaacaaatgccag 184
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggggaggaggtctgcacagccctgggatgcatttggaaaagcaaaaggaacaaatgccag 384
Query: 185 agactcagttcaggatatgaagtatatagggcaatgcacctctcctagtggtagaagcgg 244
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggctcagttcaggatgtgaagtatatagggcaatgcacctctcctagtggtagaagcgg 444
Query: 245 acctcctcaactggaagaagtctagcgtttgacagctcttcatctgttgaagccacctat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acctcctcaactggaagaagtctagcgtttgacagctcttcatctgttgaagccacctat 504
Query: 305 ctgctgtgaggttctctgcagtacagtgtaagcacccggaagctcccatggggtgctttt 364
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 505 ctgctgtgaggttctctgcagtacagtgtaaacacccggaagctcccatggggtgctttt 564
Query: 365 cctccacagacatatttattcaccaccccattagcaggatgactaatgtttaggggattt 424
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cctccacagacatatctattcaccaccccattagcaggatgactaatgtttaggggattt 624
Query: 425 tgaaagtattaagacaggtctgcctg-tacagattcagttgcttggtcaactcccaatgc 483
||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 625 tgaaaatattaagacaggtctgccttatacagattcggttgcttggtcaactcccaatgc 684
Query: 484 attaagagatacccctactccccaagttagaactgggatatgaactatcccaggagggtt 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 685 attaagagatacccctactccccaagttagaactgggatatgaactatcccaggagagtt 744
Query: 544 agaaggacctggctgaccacaaactgcaaaactaaatgtgaccagcagaggtcactagta 603
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 745 agaaggacatggctgaccacaaactgcaaaactaaatgtgaccagcagaggtcacgagta 804
Query: 604 tgcaa 608
|||||
Sbjct: 805 tgcaa 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1009
Length adjustment: 10
Effective length of query: 598
Effective length of database: 999
Effective search space: 597402
Effective search space used: 597402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_l12.g1 MSMg01no477_l12.g1 CHROMAT_FILE:
MSMg01no477_l12.g1 PHD_FILE: MSMg01no477_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:14 2005
(328 letters)
>mm_chr2_22775339_22776066
Length = 728
Score = 619 bits (320), Expect = 0.0
Identities = 327/330 (99%), Gaps = 3/330 (0%)
Strand = Plus / Minus
Query: 1 taaacataaaaaataataaaaagattacaaagtactgtagacactttcagtctgttccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 taaacataaaaaataataaaaagattacaaagtactgtagacactttcagtctgttccat 421
Query: 61 tataaatatagtaaacaggtagagagaaacacatgcaacattgtatcacaaagatctgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tataaatatagtaaacaggtagagagaaacacatgcaacattgtatcacaaagatctgga 361
Query: 121 ctgtgatcttgaacacagtaatttccataatccagaggctaaagcaaggagaacattggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ctgtgatcttgaacacagtaatttccataatccagaggctaaagcaaggagaacattggt 301
Query: 181 tgttggccagcttgggatacagggcaaacttttgcctcaaacaaaatacaagcccccctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tgttggccagcttgggatacagggcaaacttttgcctcaaacaaaatacaagcccccctg 241
Query: 241 caaatatgcagtataaatgtgtcaaaaacaaagacaactcaaagagaaagagaa--gggg 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 240 caaatatgcagtataaatgtgtcaaaaacaaagacaactcaaagagaaagagaagggggg 181
Query: 299 ggggagaaggggaaagggaggggagcatta 328
|||||||||||| |||||||||||||||||
Sbjct: 180 ggggagaagggg-aagggaggggagcatta 152
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space: 229361
Effective search space used: 229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
