BAC Information

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BAC

Clone NameMSMg01-477M24
Chromosome2 (Build37)
Map Location 121,871,763 - 122,061,836
singlet/doubletdoublet
Overlap geneEif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord
Upstream geneTgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3, Ctdspl2
Downstream geneDuox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477M24.T7 (MSMg01no477_m24.b1)MSMg01-477M24.TJ (MSMg01no477_m24.g1)
ACCAG559076AG559077
length721753
length of high quality
(start - end)
360 (326 - 685)500 (80 - 579)
definitionCHROMAT_FILE: MSMg01no477_m24.b1 PHD_FILE: MSMg01no477_m24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:21 2005CHROMAT_FILE: MSMg01no477_m24.g1 PHD_FILE: MSMg01no477_m24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,061,477 - 122,061,836)(121,871,763 - 121,872,262)
sequence
GATGTACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGCAGATA
ACGCGGAATCCAAAGAATTGCCCCTCAAGAGGCAAGGGTTTTTATCAGCA
GACCCTGCCCCTAGTCCACTCAAATGGAAGCTAAGCCTCAGTTGCCCAAC
CCATCCTCCATGGAAAGACCAAACTGTGGCTGTGTGGCATTGCAGTGGTG
GCACACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGATGGATTTCT
GAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGAAC
TACACAGAGAAACCCTGTCTTTTTGGGGGGGGGAGAGAGAGAGAGAGAAT
GAGAATCACAAATCACTGTGTCTCTTTAATTTTAATGCAGGATGTTGAGT
AGATGTTCAAATGTGATTGGAGAGAGCACTAGAAATTGAATTTGAATCTG
ACTGAGTTCTTGTCTTGGCTGTTAACTAACCAAGGCTACCATCTTGGGAA
CCACAACGATTCTTGGTTTGGAATCCACAGAAGTCTACAGGTGGAAGAGT
TAAGGAACTCAGAAAATGCTTAGTCTGCAACCACAGATAAACCACTGAGG
ACAGGCTATTAAACAGACAAGAACTCTTCATCTGAATGAGTCTCTCCTGG
TACATGTTCTTTGAATGGGAAGGAGACAGACTCTATGGTGCAGGAGAGAT
GGCTGGTATCCAATCTCCAAN
NTTTTTTCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAATCCTCCTGCCTCTGCC
TCCTGAGTGCTGGGCTTAAAAGTGCACTACCGCCAGGCAGTGGTGGTGCA
CACCTTTAATCCCAGCACTTGGGAGACAGAGGCAGGAGGATTTGTGAGTT
CGAGGATAGCCAGGGCTACACAGAAAAACCCTTGTCTCGAAAAACCAAAA
CCAAAAAAAAAAAAAGTGCACTACTTCCACCTGGCTTAAATTCTACTCTT
TTTGTACTGGGGAACGGAACCTTGTTCTTTTCCCTGAGCTACATCCCCAT
CCCTTTAACTCTGTTTGGTAGATATATACTCATAATCATTATTTCATCAT
TTACTTCCTTGATGAGCAGTTGGGTCTTTCATTAGTCTTTTTTTTTTTTT
CTGGTTTTTCCAGACAGGGTTTCTCTGTGTATCCTTGGCTGTCCTGGAAC
TCACTCTGTAGACCAGGTTGGCCTCAAATTCACAAATCTGCCTGCCTCTG
CCTCCCTAAGTGCTGGGATCAAAGGCGTGTGCTGCCACCAACCAGCATCT
CAGGGTGGTTGGTTGGTTTCTTTTTTCTCCACTAGCCAGCATTTCAGATT
TGTTTGTTTAGTTAGGGGGTTTGTCCTTTTTTTTTTTTAATAGCCAATCT
TTCTATACTTTTAAAAAAATTATTTATATTGGGGTTCTGCCCCCCCATAT
GTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_m24.b1 MSMg01no477_m24.b1 CHROMAT_FILE:
MSMg01no477_m24.b1 PHD_FILE: MSMg01no477_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:21 2005
         (360 letters)



>mm_chr2_122061277_122062036
          Length = 760

 Score =  696 bits (360), Expect = 0.0
 Identities = 360/360 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggggggggagagagagagagagaatgagaatcacaaatcactgtgtctctttaattttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggggggggagagagagagagagaatgagaatcacaaatcactgtgtctctttaattttaa 501

                                                                       
Query: 61  tgcaggatgttgagtagatgttcaaatgtgattggagagagcactagaaattgaatttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgcaggatgttgagtagatgttcaaatgtgattggagagagcactagaaattgaatttga 441

                                                                       
Query: 121 atctgactgagttcttgtcttggctgttaactaaccaaggctaccatcttgggaaccaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atctgactgagttcttgtcttggctgttaactaaccaaggctaccatcttgggaaccaca 381

                                                                       
Query: 181 acgattcttggtttggaatccacagaagtctacaggtggaagagttaaggaactcagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acgattcttggtttggaatccacagaagtctacaggtggaagagttaaggaactcagaaa 321

                                                                       
Query: 241 atgcttagtctgcaaccacagataaaccactgaggacaggctattaaacagacaagaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atgcttagtctgcaaccacagataaaccactgaggacaggctattaaacagacaagaact 261

                                                                       
Query: 301 cttcatctgaatgagtctctcctggtacatgttctttgaatgggaaggagacagactcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cttcatctgaatgagtctctcctggtacatgttctttgaatgggaaggagacagactcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no477_m24.g1 MSMg01no477_m24.g1 CHROMAT_FILE:
MSMg01no477_m24.g1 PHD_FILE: MSMg01no477_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:22 2005
         (500 letters)



>mm_chr2_121871563_121872462
          Length = 900

 Score =  944 bits (488), Expect = 0.0
 Identities = 497/500 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaatcctcctgcctctgcctcctgagtgctgggcttaaaagtgcactaccgccaggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaatcctcctgcctctgcctcctgagtgctgggcttaaaagtgcactaccgccaggca 260

                                                                       
Query: 61  gtggtggtgcacacctttaatcccagcacttgggagacagaggcaggaggatttgtgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggtggtgcacacctttaatcccagcacttgggagacagaggcaggaggatttgtgagt 320

                                                                       
Query: 121 tcgaggatagccagggctacacagaaaaacccttgtctcgaaaaaccaaaaccaaaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcgaggatagccagggctacacagaaaaacccttgtctcgaaaaaccaaaaccaaaaaaa 380

                                                                       
Query: 181 aaaaaagtgcactacttccacctggcttaaattctactctttttgtactggggaacggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaaagtgcactacttccacctggcttaaattctactctttttgtactggggaacggaa 440

                                                                       
Query: 241 ccttgttcttttccctgagctacatccccatccctttaactctgtttggtagatatatac 300
           ||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaagtacttttccctgagctacatccccatccctttaactctgtttggtagatatatac 500

                                                                       
Query: 301 tcataatcattatttcatcatttacttccttgatgagcagttgggtctttcattagtctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcataatcattatttcatcatttacttccttgatgagcagttgggtctttcattagtctt 560

                                                                       
Query: 361 tttttttttttctggtttttccagacagggtttctctgtgtatccttggctgtcctggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttttttttttctggtttttccagacagggtttctctgtgtatccttggctgtcctggaa 620

                                                                       
Query: 421 ctcactctgtagaccaggttggcctcaaattcacaaatctgcctgcctctgcctccctaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcactctgtagaccaggttggcctcaaattcacaaatctgcctgcctctgcctccctaa 680

                               
Query: 481 gtgctgggatcaaaggcgtg 500
           ||||||||||||||||||||
Sbjct: 681 gtgctgggatcaaaggcgtg 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)