BAC Information

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BAC

Clone NameMSMg01-477O09
Chromosome2 (Build37)
Map Location 153,351,955 - 153,352,585
singlet/doubletsinglet
Overlap genenone
Upstream geneDefb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik
Downstream geneCommd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477O09.T7 (MSMg01no477_o09.b1)MSMg01-477O09.TJ (MSMg01no477_o09.g1)
ACCAG559141AG559142
length682726
length of high quality
(start - end)
80 (70 - 149)628 (75 - 702)
definitionCHROMAT_FILE: MSMg01no477_o09.b1 PHD_FILE: MSMg01no477_o09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:28 2005CHROMAT_FILE: MSMg01no477_o09.g1 PHD_FILE: MSMg01no477_o09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTTCTCCTTTGTCTTAATTTTGCGCCTCTTAACACTACTTTTCCAGAG
GACCGCGGATTCACAAATTTCTCTCTTAAATTTAAACTGTTACAAGAGTT
TGCTCACTTTAAAATTAACAGTATTTCCTTTTGTTCTTTGACAGATCAAT
TGTTGAAAATAAGTTTCAAATTTAAAAGGAACTATTTTTATATCCAATTG
TATAAAAAATGAACCCTTCTCATAACCTCATGATATGACTCCATGGGTTA
AAAACCCCCGACGGCAATTTGCCCAAATCACCTTTGTTTTTTTTTCTCCC
CCCAGCTCCTCAATTTTGAATATTCTTACCACCCCCACGAAATTTTCCCC
TTTTTCTCCCGGGTTAACATTTCCCTCTTAATCTTTTCTTTTTTTACCCA
CACCTATTACGGCGGGTTTATCTATACATACATTCTTTCCCTCCCCTGCC
GTCGGCATTCCACATACTGTTTTTATTTAATATCGCCCCTTTCTTTTCTC
AACTTCTATTCCTACAACCCCTCTCCCCTCTTTGACCCATTCTATTTATA
ACCCATTCATTTTATGTTAATTCAATACCTCTCACTCTCTCTACCTACAT
ATCCTTCTTATCTTACTTAATCTCCTCTTTTTCTCTTTTTCTCATTTTTT
TCCCCCCCTCCTTTTTTTCTTTTATATTTTTG
GTTGTTCGATGAAGTGGGAGGCCTGGNGGCCGCCTTTCAAACCAATTTAG
GTGAACTATAGATGCACCAAGGAATTCTGAGGCAGCCGCGGCCTCTTCCG
AGGAGGGACTGAATGGGACCCTTTTTGAAAGATGTAAAGGTCACCTCTCA
GCCTTTACTCACACACACACACACACACACACACACACGCATACACACAT
GTGCGGACATGCACATGGAGTTGAAGTTGCCCTTGCTTCTGGTGTCAGTG
TAGATTTTGTAGTTTTGTCTTCTGTAGGTTTTTGTGAAGGTCATTGGGCC
ATAAACCTTTGTCTGGGTANTTATTCCGAGTCTCCAGGCCTTGGGGGTAG
TCCCCAGGCTTTTGAGGTTTACACTGGGCGTTTGGGGTGGGTGAGCAACT
TCTCCTGGGACACCTGACTAGCGGGAAAGACAGGTACAGCTAACTAAGTG
ATGTAGAGAGGGAAGGCTGGCAGGAAATGTCAGGGAATTGGGGAGCCAGA
GATAAGCCCAAGTATGGCTTCGTAGTCAAGGAGTCACCATCCTGTGTGCC
TTCTTAACCTCCTCAGGTCCCCTCCCCTCCCCCTACAGTTCTAGGAGAAG
CTGTGGTCAGGGCCGGTTCCCAGCTTCCAGGCTAGCTTCGGGCTTCGGGT
CTATGATCTGACACTTGTCCTGTCCCATCTGGCCCTGAGCTTTTCTGGGT
GTGTGTGTGACAAAGGCTTAATCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_o09.g1 MSMg01no477_o09.g1 CHROMAT_FILE:
MSMg01no477_o09.g1 PHD_FILE: MSMg01no477_o09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:28 2005
         (628 letters)



>mm_chr2_153351630_153352658
          Length = 1029

 Score = 1133 bits (586), Expect = 0.0
 Identities = 619/633 (97%), Gaps = 7/633 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctgaggcagccgcggcctcttccgaggagggactgaatgggaccctttttgaaagatg 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 956 ttctgaggcagccgcggcctcttccgaggagggactgaatgggaccttttttgaaagatg 897

                                                                       
Query: 61  taaaggtcacctctcagcctttact--cacacacacacacacacacacacacacacgcat 118
           ||||||||| |||||||||||||||  ||||||||||||||||||||||||||||| || 
Sbjct: 896 taaaggtcatctctcagcctttactcacacacacacacacacacacacacacacacacac 837

                                                                       
Query: 119 acacacatgtgcggacatgcacatggagttgaagttgcccttgcttctggtgtcagtgta 178
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 836 acacacatgtgcggacatgcacatggagttgaagttgcccttgcttctggtgtcagtgga 777

                                                                       
Query: 179 gattttgtagttttgtcttctgtaggtttttgtgaaggtcattgggccataaacctttgt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 gattttgtagttttgtcttctgtaggtttttgtgaaggtcattgggccataaacctttgt 717

                                                                       
Query: 239 ctgggt---anttattccgagtctccaggccttgggggtagtccccaggcttttgaggtt 295
           ||  ||   | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 ct--gtgacatttattccgagtctccaggccttgggggtagtccccaggcttttgaggtt 659

                                                                       
Query: 296 tacactgggcgtttggggtgggtgagcaacttctcctgggacacctgactagcgggaaag 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tacactgggcgtttggggtgggtgagcaacttctcctgggacacctgactagcgggaaag 599

                                                                       
Query: 356 acaggtacagctaactaagtgatgtagagagggaaggctggcaggaaatgtcagggaatt 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 acaggtacagctaactaagtgatgtagagagggaaggctggcaggaaatgtcagggaatt 539

                                                                       
Query: 416 ggggagccagagataagcccaagtatggcttcgtagtcaaggagtcaccatcctgtgtgc 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ggggagccagagataagcccaagtatggcttcgtagtcaaggagtcaccatcctgtgtgc 479

                                                                       
Query: 476 cttcttaacctcctcaggtcccctcccctccccctacagttctaggagaagctgtggtca 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cttcttaacctcctcaggtcccctcccctccccctacagttctaggagaagctgtggtca 419

                                                                       
Query: 536 gggccggttcccagcttccaggctagcttcgggcttcgggtctatgatctgacacttgtc 595
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gggctggttcccagcttccaggctagcttcgggcttcgggtctatgatctgacacttgtc 359

                                            
Query: 596 ctgtcccatctggccctgagcttttctgggtgt 628
           |||||||||||||||||||||||||||||||||
Sbjct: 358 ctgtcccatctggccctgagcttttctgggtgt 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1029
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1019
Effective search space:   629742
Effective search space used:   629742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)