Query= MSMg01no478_a19.b1 MSMg01no478_a19.b1 CHROMAT_FILE:
MSMg01no478_a19.b1 PHD_FILE: MSMg01no478_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:40 2005
(672 letters)
>mm_chr2_83480797_83481868
Length = 1072
Score = 1278 bits (661), Expect = 0.0
Identities = 671/677 (99%), Gaps = 5/677 (0%)
Strand = Plus / Plus
Query: 1 tcacacttactgatccctgatttatgtaattcatcatggttttgtgaaaaaataagaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tcacacttactgatccctgatttatgtaattcatcatggttttgtgaaaaaataagaaca 255
Query: 61 agatataatcaccaatcctaggccattcataaactccagaaaagaataaaatccttatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 agatataatcaccaatcctaggccattcataaactccagaaaagaataaaatccttatag 315
Query: 121 agtttagacttagcttctaagacagtaactgtatt-----aaaaaaaaaaataggggagc 175
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 316 agtttagacttagcttctaagacagtaactgtatttaaaaaaaaaaaaaaataggggagc 375
Query: 176 agggcagggggaagggtataggaggctttggggatagcatttgaaatgtaaatgaagaaa 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 agggcagggggaagggtataggaggctttggggatagcatttgaaatgtaaatgaagaaa 435
Query: 236 ataaaaaatagtaatgcctgctagagtaggattgtcactaatgtaactatagaatggtcg 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ataaaaaatagtaatgcctgctagagtaggattgtcactaatgtaactatagaatggtcg 495
Query: 296 tgaatgtaatataaaaaccttaagtttatggaaaaataaaaacctgtgataaaaccattc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tgaatgtaatataaaaaccttaagtttatggaaaaataaaaacctgtgataaaaccattc 555
Query: 356 ctacatggttagaaagaaaacatttaagtaatagggttacaccatcaaagttgtatcaga 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctacatggttagaaagaaaacatttaagtaatagggttacaccatcaaagttgtatcaga 615
Query: 416 ggacttattttgagagtaatactgggtgaagaaattggaacaagataaagaaagtaaaag 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ggacttattttgagagtaatactgggtgaagaaattggaacaagataaagaaagtaaaag 675
Query: 476 ccccctcaaaatagtccaagtgaaaatgcagccttgaaataagattgtgcgattgaaggc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ccccctcaaaatagtccaagtgaaaatgcagccttgaaataagattgtgcgattgaaggc 735
Query: 536 agacatctgagttatactgaagaggagaacaatgtggctcataagaaaacacttgctcac 595
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 aggcatctgagttatactgaagaggagaacaatgtggctcataagaaaacacttgctcac 795
Query: 596 cacatgtaaggcctccaattctacccaaactgagggaggaggggcgtggctatgatttga 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 cacatgtaaggcctccaattctacccaaactgagggaggaggggcgtggctatgatttga 855
Query: 656 ctaaacttggaggttga 672
|||||||||||||||||
Sbjct: 856 ctaaacttggaggttga 872
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space: 703044
Effective search space used: 703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_a19.g1 MSMg01no478_a19.g1 CHROMAT_FILE:
MSMg01no478_a19.g1 PHD_FILE: MSMg01no478_a19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:40 2005
(682 letters)
>mm_chr2_83515101_83516182
Length = 1082
Score = 922 bits (477), Expect = 0.0
Identities = 539/573 (94%), Gaps = 22/573 (3%)
Strand = Plus / Minus
Query: 108 aagactttagtctggaatttgacatactggcaggaaatacatgttactgagagcagctta 167
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1082 aagactttagtctggaatttgacatactggcaggaaatacatgttactgtgagcagctta 1023
Query: 168 ttggaaatactcgagagatagagccaccactcatgtggaagtgattacggcaatcacaag 227
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||
Sbjct: 1022 ttggaaatactcgagagatagag---ccactcatgtggaagtgattatggcaatcacgag 966
Query: 228 agcaagtgaggctggcaaaggacagaacacaaagatggcagagaagcctgaatcacagag 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 agcaagtgaggctggcaaaggacagaacacaaagatggcagagaagcctgaatcacagag 906
Query: 288 aaaggctcggcaggaaacccctccctctgatgtgaagtatcaaacaaggttccaggcagt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 aaaggctcggcaggaaacccctccctctgatgtgaagtatcaaacaaggttccaggcagt 846
Query: 348 tctgcaacagctttactgtcag-------------------ggcctatgggaagtctgag 388
|||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 845 tctgcaacagctttacagtcagggcagatgacattaccaacggcctatgggaagtctgag 786
Query: 389 tgtggctggctaggaagcctacgggcaactttagagccaatttcctgcttagtatttcca 448
||||||||||||||||||||| ||||||||| | |||| || ||||||||||||||||||
Sbjct: 785 tgtggctggctaggaagcctatgggcaacttcacagcccatgtcctgcttagtatttcca 726
Query: 449 ccaggtttattcttggcaaaagtggaaggctggaacagaagcagaccaaagttgcccact 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtttattcttggcaaaagtggaaggctggaacagaagcagaccaaagttgcccact 666
Query: 509 gtatcaaaaacagacacgttagaccaacttggctatgtctctgactataagtgtctgctt 568
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 665 gtatcaaaaacagacacgttagaccaacttggctatgtctctgactataagtgcctgctt 606
Query: 569 agaagagaaatgtacgcatatagttaataatgccaaatttgaggctggagagatggggag 628
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 605 agaagagaaatgtacgcatatagttaataatgccaagtttgaggctggagagatggggag 546
Query: 629 tggttaagagcactggctgttcttccagaggac 661
||||||||||||||||||| |||||||||||||
Sbjct: 545 tggttaagagcactggctgctcttccagaggac 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
