Query= MSMg01no478_d07.b1 MSMg01no478_d07.b1 CHROMAT_FILE:
MSMg01no478_d07.b1 PHD_FILE: MSMg01no478_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:52 2005
(676 letters)
>mm_chr2_83721092_83722171
Length = 1080
Score = 1091 bits (564), Expect = 0.0
Identities = 651/684 (95%), Gaps = 12/684 (1%)
Strand = Plus / Minus
Query: 1 atctactgttttacaaaatttgggtgtctctgttttagtttcctccaacgcatttaagtg 60
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 880 atctactgttttacaaaattcgggtgtctctgttttagtttcctccaacatatttaagtg 821
Query: 61 gcttgaatttgctcagaaggtagggggagaaaagaaccatttcttcccacccaaagaaaa 120
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 820 gcttgaatttgctcaggaggtagggggtgaaaagaaccatttcttcccacccaaagaaaa 761
Query: 121 gggcgagctgctgcacaaatgtgtcctagtgaaaagctttaggtaaaacaggatggttga 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 gggcgagctgctgtacaaatgtgtcctagtgaaaagctttaggtaaaacaggatggttga 701
Query: 181 tggtactcgagagctcttatgtttaggagagtagagagccagtaaataaaaacagctcct 240
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 700 tggtactcgagagctcttatgtttaggagagtggagagccagtaattaaaaacagctcct 641
Query: 241 gagttcacactgatagaagaacagtagtaaatgcctgacactggcaagtgaggctgcaca 300
|||||||||||| || |||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 640 gagttcacactg--ag-agaacagtagtaaatgcctgacactggcaaatga-gctgcaca 585
Query: 301 ggctcaggagacgggg-acacatcccctggattcccagactgttcttctccaatcgttcc 359
|||||||||||||||| ||||| |||||||| |||||| |||||||||||||| ||||||
Sbjct: 584 ggctcaggagacggggaacacaacccctggaatcccaggctgttcttctccaaccgttcc 525
Query: 360 aaagcatcagcatttagcaatgttgacaaagcctggagtt------tttttttttgtttt 413
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 524 aaagcatcagcatttagcaatgttgacaaagcctggagttttttggtttttttttttttt 465
Query: 414 g-tttttttttaatatctggaaactggcctttcttttcctgcacgattatacagaatatc 472
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gttttttttttaatatctggaaactggcctttcttttcctgcacgattatacagaatatc 405
Query: 473 cattgccctttgtctccacagtctattcattttcggcattccaaagttttgtatttttaa 532
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 404 catttccctttgtctccacagtctattcattttcggcattccaaatttttgtatttttaa 345
Query: 533 atcagatttgatagtctctaaacgactgatttggaatgggggagatgacaaaaacatctt 592
|||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 344 atcagacttgatagtctctaaatgactgatttggaatgggggagatgacaaagacatctt 285
Query: 593 aaaaaccaattccagcctttatggattcgtgaaccttaaaagtcaaagcctccgctcagc 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 284 aaaaaccaattccagcctttatggattcgtgaaccttaaaagtcaaagcctccgcccagc 225
Query: 653 tgtcaactaaggtcacttcatctg 676
|||||||||||||| |||||||||
Sbjct: 224 tgtcaactaaggtcgcttcatctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1080
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1070
Effective search space: 712620
Effective search space used: 712620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_d07.g1 MSMg01no478_d07.g1 CHROMAT_FILE:
MSMg01no478_d07.g1 PHD_FILE: MSMg01no478_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:52 2005
(624 letters)
>mm_chr2_83516096_83517118
Length = 1023
Score = 1160 bits (600), Expect = 0.0
Identities = 618/624 (99%), Gaps = 1/624 (0%)
Strand = Plus / Plus
Query: 1 tcctgcagcaatgctcttttctgttcacatggtcactgtctcttaagcagattcttatct 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctgcagcagtgctcttttctgttcacatggtcactgtctcttaagcagattcttatct 260
Query: 61 ttgttcagaatttgacatacatggtttatcttccagagcaggaacatctagagtatgaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgttcagaatttgacatacatggtttatcttccagagcaggaacatctagagtatgaga 320
Query: 121 gacatggtgaaaacaagggagggctctcttaatagaaactggtgtactttccaacctcag 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacatggtgaaaacaagggagggttctcttaatagaaactggtgtactttccaacctcag 380
Query: 181 attacagtcaccaaacttaactgttaacttatttccttcccagaactgatacatccaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attacagtcaccaaacttaactgttaacttatttccttcccagaactgatacatccaaag 440
Query: 241 ccctgccagatttagcttcctggggcctagccctgttagtcctgagttctgcttcataac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctgccagatttagcttcctggggcctagccctgttagtcctgagttctgcttcataac 500
Query: 301 tcttcaaaagctctagattgccagccaaggagaatggaatgcaggcatggccttcaaggt 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 tcttcaaaagctctagattgccagccaaggagaatggaatgcaggcatggtcttcaaggt 560
Query: 361 cttggctgtcctggctttgttgctatgtcttgattctgattgctcagtgtgatgtgtttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttggctgtcctggctttgttgctatgtcttgattctgattgctcagtgtgatgtgtttt 620
Query: 421 atatcctgggtttccttcttaggaaaagggggattcaaatgcttgttcttcagctgtgag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atatcctgggtttccttcttaggaaaagggggattcaaatgcttgttcttcagctgtgag 680
Query: 481 gctgcctcccggtggagctgcaagtgcttactcagcacagtcgcactgggaacaggcagc 540
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 gctgcctcccggtggagctgcaagtgcttactcag-acagtcgcactgggaacaggcagc 739
Query: 541 tatgactgtgtcttgtgggtttttatgtctcatctgcgtgttcctgtttgtgaaatagta 600
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 740 tatgactgtgtcttgtgggtttttatgtctcatctgcgtgttcccgtttgagaaatagta 799
Query: 601 acatccttaaatagtctaatgatg 624
||||||||||||||||||||||||
Sbjct: 800 acatccttaaatagtctaatgatg 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1023
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1013
Effective search space: 621982
Effective search space used: 621982
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
