BAC Information

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BAC

Clone NameMSMg01-478E08
Chromosome2 (Build37)
Map Location 65,641,549 - 65,810,962
singlet/doubletdoublet
Overlap geneA330102K23Rik
Upstream geneLOC667291, Grb14, Cobll1, LOC383705, 9330158F14Rik, Scn3a, Scn2a1
Downstream geneGalnt3, LOC620893, Ttc21b, Scn1a, LOC100039486, LOC383706, Scn9a, Scn7a, LOC383707, LOC100039540
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478E08.T7 (MSMg01no478_e08.b1)MSMg01-478E08.TJ (MSMg01no478_e08.g1)
ACCAG559426AG559427
length739740
length of high quality
(start - end)
361 (317 - 677)597 (65 - 661)
definitionCHROMAT_FILE: MSMg01no478_e08.b1 PHD_FILE: MSMg01no478_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:57 2005CHROMAT_FILE: MSMg01no478_e08.g1 PHD_FILE: MSMg01no478_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,641,549 - 65,641,909)(65,810,593 - 65,810,962)
sequence
GCGGCCGCTAAACGACTCACTTTTCAAAGAGGATGCGCGGAATTCAAGGT
TTCCCAAAGAACAGCTTTCCTCTATACCCTGTGACGGCACAGTGTTGAGT
GTCTGTGACTCCCAGAATCGGTGGAGTGATGGAGAGGATGGCAGGAAAGG
GAGTATACCTGCTTATTAAATAAAATAGTGGGCTGGACATAATAGTGCAC
ACCTTTAAACCTAGTACTCTGTAGGCAGAGACAGGCAGGTTTCTGCGAGC
TCAGGGCTAGCCTGGTCCACAGTGAGTTTCAGGACAGCCAGAACTAAACA
GTGTGATCNCTTCTTAAACAAACAAACCAAACCAAACAAAAATCCAACAC
TTTAAAAAAGTAGAATTCTAAAAAGAGATACGGGGAAGATTCGAGGAGGA
AAGAGGAAGAAGAGGGAGAGGAGAGCAGAAAGTGAAACAGGAGGGTCGAC
TGAGGATTCTCTGAAGGACACATAGAAGACTCCATAAAACCCCTGTACAT
GTGAGAGAGAAAGTCCTACCTACCCAGCTCTGAGGGAACCTGGGAAGACA
ATGATGTGGCCAAAGTCTCAGGACAGCAAATGAATATCTCAAAAATAACG
ATAATTCATTCACCTCTTCAGCCCTCTCAGATACAGAACCACCCCCAAAA
TCTTAGTTTTTAACCCAGAATTTTTTGAAAGAACAAAGGCACTTACCTTT
TGTTAGGTGTTCATACTCCAGACATCCTTTCAGAAGGTG
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCACCCATGTGTGCTGGCTAGTTTTATGTCAACTTGA
CACAAGCTAGAGTCACTGGAGGAAAAGGAGCCTCAATTGAGAAAATATCT
TAGTAAGACTGAGCTATAGGCAGCAGGCTGATAGGGCATTTTCTTCATGA
TTGGTCGGGGAGAACTCAGCCCATTGGGAGTAAGAACCACCCCTGGGCAG
GTGGTCCTGGGATCTATAAGAAAGCAGGCTGAGCAAGGCACAGGGAACAA
GCCAGTATGTATAAGCCATCCACAGCTTCGGCATCAGCTCCTGCCTTCTG
GTTCCTGCCGTGCTTCAGTACCTGTCTGACTTCATCCAATGATGAACAGT
GATGTGGAAATGTAAGCCCAATAATCCCTTTCCTCCCCAGTTTGTATTTA
GCCATGGTGTTTCATCACAGCATTAATAGCCTTAACTAAAAAGCCATGGC
TCTAACAGGAAGCAGAGTCTAAAAGTCCTCCCAGTTAAAGGACTTCAGGA
AATGGGAAGTCAGACAAATGGAAATAAACCAGCCAGCATGGGTGGTGCAG
AAATCCAGAATACAGAAAGACATTTACTGAACCTGTCTCCCAAAACAATG
GTGGCGCTTGGAAATGGGGATGTGTCTGTCTTGTCTCTTGTCCTCACCCC
AGTGTACGTGACTATCCCTGGCCCATGGAAGGAGCTTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_e08.b1 MSMg01no478_e08.b1 CHROMAT_FILE:
MSMg01no478_e08.b1 PHD_FILE: MSMg01no478_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:57 2005
         (361 letters)



>mm_chr2_65641349_65642109
          Length = 761

 Score =  683 bits (353), Expect = 0.0
 Identities = 359/361 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaaacaaaccaaaccaaacaaaaatccaacactttaaaaaagtagaattctaaaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacaaacaaaccaaaccaaacaaaaatccaacactttaaaaaagtagaattctaaaaaga 260

                                                                       
Query: 61  gatacggggaagattcgaggaggaaagaggaagaagagggagaggagagcagaaagtgaa 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 gatacggggaagattcgaggaggaaagaggaagaagagggggaggagagcagaaagtgaa 320

                                                                       
Query: 121 acaggagggtcgactgaggattctctgaaggacacatagaagactccataaaacccctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaggagggtcgactgaggattctctgaaggacacatagaagactccataaaacccctgt 380

                                                                       
Query: 181 acatgtgagagagaaagtcctacctacccagctctgagggaacctgggaagacaatgatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatgtgagagagaaagtcctacctacccagctctgagggaacctgggaagacaatgatg 440

                                                                       
Query: 241 tggccaaagtctcaggacagcaaatgaatatctcaaaaataacgataattcattcacctc 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 tggccaaagtctcaggacagcaaatgaatatctcaaaaataacgataactcattcacctc 500

                                                                       
Query: 301 ttcagccctctcagatacagaaccacccccaaaatcttagtttttaacccagaatttttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcagccctctcagatacagaaccacccccaaaatcttagtttttaacccagaatttttt 560

            
Query: 361 g 361
           |
Sbjct: 561 g 561


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no478_e08.g1 MSMg01no478_e08.g1 CHROMAT_FILE:
MSMg01no478_e08.g1 PHD_FILE: MSMg01no478_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:57 2005
         (597 letters)



>mm_chr2_65809966_65810962
          Length = 997

 Score =  677 bits (350), Expect = 0.0
 Identities = 365/370 (98%)
 Strand = Plus / Minus

                                                                       
Query: 227 cagggaacaagccagtatgtataagccatccacagcttcggcatcagctcctgccttctg 286
           ||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 997 cagggaacaagccagtaagcagaagccatccacagcttcggcatcagctcctgccttctg 938

                                                                       
Query: 287 gttcctgccgtgcttcagtacctgtctgacttcatccaatgatgaacagtgatgtggaaa 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 gttcctgccgtgcttcagtacctgtctgacttcatccaatgatgaacagtgatgtggaaa 878

                                                                       
Query: 347 tgtaagcccaataatccctttcctccccagtttgtatttagccatggtgtttcatcacag 406
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 877 tgtaagcccaataatccctttcctccccagtttgcatttagccatggtgtttcatcacag 818

                                                                       
Query: 407 cattaatagccttaactaaaaagccatggctctaacaggaagcagagtctaaaagtcctc 466
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 817 cattaatagccttaactaaaaagccatggctctaacaggaagcagactctaaaagtcctc 758

                                                                       
Query: 467 ccagttaaaggacttcaggaaatgggaagtcagacaaatggaaataaaccagccagcatg 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ccagttaaaggacttcaggaaatgggaagtcagacaaatggaaataaaccagccagcatg 698

                                                                       
Query: 527 ggtggtgcagaaatccagaatacagaaagacatttactgaacctgtctcccaaaacaatg 586
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ggtggtgcagaaatccagaatacagaaagacatttactgaacctgtctcccaaaacaatg 638

                     
Query: 587 gtggcgcttg 596
           ||||||||||
Sbjct: 637 gtggcgcttg 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)