Query= MSMg01no478_j04.b1 MSMg01no478_j04.b1 CHROMAT_FILE:
MSMg01no478_j04.b1 PHD_FILE: MSMg01no478_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:19 2005
(673 letters)
>mm_chr2_110231834_110232901
Length = 1068
Score = 1154 bits (597), Expect = 0.0
Identities = 653/673 (97%), Gaps = 5/673 (0%)
Strand = Plus / Minus
Query: 1 gtttcatggggaaatctgggaaagttattacaagaattgagctctggctatgtaccagga 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 868 gtttcatggggaaatctgggaaagttattacaagaattaagctctggctatgtaccagga 809
Query: 61 aaacatacctggatgaattaattcatttattcaagtaaatcaatcaatatctacttattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 aaacatacctggatgaattaattcatttattcaagtaaatcaatcaatatctacttattg 749
Query: 121 agcacatactacattcaaagccatgtgctaaatacaaggaaaaggatatacaaatgtatg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 agcacatactacattcaaagccatgtgctaaatacaaggaaaaggatatacaaatgtata 689
Query: 181 tacccttattatctttataatccatcgaagattaaaatgtttaaaataattgctgaaata 240
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 688 tacccttattatctttataatccatggaagattaaaatgttaaaaataattgctgaaata 629
Query: 241 tttatttatattctaaatatgttacagcacgacatcattcccacccagaatatcatggaa 300
|||| | | |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 628 ttta---a-actctaaatatgttacagcatgacatcattcccacccagaatatcatggaa 573
Query: 301 gacacctctgagaaactgcatgatgaccactgggctgcccagaacagcatacctctatcc 360
|||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||
Sbjct: 572 gacacctctgagaaactgcatgatgaccactgggatgcccagagcagcatatctctatcc 513
Query: 361 actgacattggcaaagttgttagaaagatcatccagaacttaatggtcagcttactggag 420
|||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 512 actgacattggcaatgttgttagaacgatcatccagaacttaatcgtcagcttactggag 453
Query: 421 tggtcttctgagtttctacacccaatgtgttcaccatggatctgaccagacacctaaaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tggtcttctgagtttctacacccaatgtgttcaccatggatctgaccagacacctaaaga 393
Query: 481 aagcagccaaatatggaattgagaaggtggtgaagcaagctttggagaagcccctaaagg 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 392 aagcagccaaatatggaattgagaaagtggtgaagcaagctttggagaagcccctaaagg 333
Query: 541 gcatcctgagctatactgaagaccaaatatttcattacgcctttgattctggagttggca 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 332 gcatcctgagctatactgaagaccaaatatttcattacacctttgattctggagttggca 273
Query: 601 ttgcctttattggccacattatcaagctcatttgtaagtatgaaaaaaaaaaactttgac 660
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 272 ttgcctttattggccacattatcaagctcatttgtaagtatg-aaaaaaaaaactttgac 214
Query: 661 tacagcaaaaggt 673
|||| ||||||||
Sbjct: 213 tacatcaaaaggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1068
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1058
Effective search space: 701454
Effective search space used: 701454
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_j04.g1 MSMg01no478_j04.g1 CHROMAT_FILE:
MSMg01no478_j04.g1 PHD_FILE: MSMg01no478_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:19 2005
(653 letters)
>mm_chr2_110067202_110068254
Length = 1053
Score = 988 bits (511), Expect = 0.0
Identities = 596/653 (91%), Gaps = 48/653 (7%)
Strand = Plus / Plus
Query: 1 atcacccagtagcccatgtgagcaactattgctttcagctataatttggttgtagctata 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 249 atcacccagtagcccatgtgagtaactattgctttcagctataatttggttgtagctata 308
Query: 61 gtctataaaagggcactagtagatatttgtaatctggataatgatccaatactatgttgt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 atctataaaagggcactagtagatatttgtaatctggataatgatccaatactatgttgt 368
Query: 121 ttgctgttcagctcctctcagctttggttgctccatgccctccccccaccccagggtgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 369 ttgctgttcagctcctctcagctttggttgctccatgccctccccccaccccagggtaac 428
Query: 181 tgcttcgtattaaacagtctgctttgctttctgtgttctccctgattttatttatttatt 240
|||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 429 tgcttcatattaaacagcctgctttgctttctgtgttctccctgattt------------ 476
Query: 241 tatttatttatttatttatttatttatttttgcatcaaacatagctccaggctcaccttg 300
||| ||| ||| |||||| |||||||||||||||||||||||||||
Sbjct: 477 --------------ttt-ttt-ttt-tttttgaatcaaacatagctccaggctcaccttg 519
Query: 301 tattttccctgctctggctctcaagtcacactttttagaagatatcttgattccctctac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tattttccctgctctggctctcaagtcacactttttagaagatatcttgattccctctac 579
Query: 361 aaagaatacagttggagatgaagaatacagttggagatgaaggcataagttctggatgag 420
| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 580 a-------------------aagaatacagttggagatgaaggcctaagttctggatgag 620
Query: 421 cttacttgtttaagagatatcagcatttactaaatgaatcactgagccgagctggtctgg 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttacttgttttagagatatcagcatttactaaatgaatcactgagccgagctggtctgg 680
Query: 481 aaggcaccacccaacaaggtatagaataatggcatcaagctcgagtcaagcaaaatgcag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaggcaccacccaacaaggtatagaataatggcatcaagctcgagtcaagcaaaatgcag 740
Query: 541 gtactgactggagcttgaggatgccccaaaggaagccctagagagcagaatcagtagaaa 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 741 gtactgactggagcttgaggatgcccaaaaggaagccctagagagcagaatcagtagaaa 800
Query: 601 agatggagggtgcatgtatagatagtgtgagacaaagactttatattgagtca 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agatggagggtgcatgtatagatagtgtgagacaaagactttatattgagtca 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
