Query= MSMg01no478_n18.b1 MSMg01no478_n18.b1 CHROMAT_FILE:
MSMg01no478_n18.b1 PHD_FILE: MSMg01no478_n18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:40 2005
(235 letters)
>mm_chr2_72906711_72907345
Length = 635
Score = 408 bits (211), Expect = e-118
Identities = 228/237 (96%), Gaps = 8/237 (3%)
Strand = Plus / Plus
Query: 5 ggaattctcctggttc--gcctaagctaggagaggctgacctatgctgtgctagactctg 62
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattctcctg--tctggcctaagctaggagaggctgacctatgctgtgctagactctg 262
Query: 63 atcagggtttacagcttgtgcctctttttatgagctcagcagaaatatgttgccagctta 122
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atcagggtttacagtttgtgcctctttttatgagctcagcagaaatatgttgccagctta 322
Query: 123 tgttcttttatctagcatcctgcacatgaactgaaccaagagaatttgataagcatgagg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgttcttttatctagcatcctgcacatgaactgaaccaagagaatttgataagcatgagg 382
Query: 183 gaaataaatgattggatggatggatggatggatggatggat----ggatggatggat 235
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 383 gaaataaatgattggatggatggatggatggatggatggatatatggatggatggat 439
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space: 141476
Effective search space used: 141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no478_n18.g1 MSMg01no478_n18.g1 CHROMAT_FILE:
MSMg01no478_n18.g1 PHD_FILE: MSMg01no478_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:40 2005
(633 letters)
>mm_chr2_73140195_73141227
Length = 1033
Score = 992 bits (513), Expect = 0.0
Identities = 544/555 (98%), Gaps = 2/555 (0%)
Strand = Plus / Minus
Query: 79 cttatgacaggttatctttgttgttggctgctgcttactccaggctggctagtctgtacg 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1033 cttatgacaggttatctttgttgttggctgctgcttactccaggctggctagtctgtacg 974
Query: 139 cttccaggcagtctcctgtctccacttgtatcttgtggtaggcggactagtgtcttagct 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 cttccaggcagtctcctgtctccacttgtatcttgtggtaggcggactagtgtcttagct 914
Query: 199 acttttctattgctttgaatgggtaattcccattaccaagggaactttctgaagaaacac 258
||||||||||||||| ||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 913 acttttctattgcttcgaatgggtaattcccattaccaagggaacgtacagaagaaacac 854
Query: 259 ttaatatgggccttgcatttcagaccttagaacctatgaccgtcatggcggggagcatgg 318
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 853 ttaatgtgggccttgcatttcagaccttagaacctatgaccatcatggcggggagcatgg 794
Query: 319 caacatgccgagtgctgtggcagtagctgagtgcttgcgtccttatctgcaagtaggata 378
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 793 caacatgccgagtgctgtggcagtagctgagcgcttgcgtccttatctgcaagtaggata 734
Query: 379 aagagctaactgaaaagttttaatttcagctcctcagtaccttcttagtgtttcatcgaa 438
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gagagctaactgaaaagttttaatttcagctcctcagtaccttcttagtgtttcatcgaa 674
Query: 439 gcccaactcacaataggtcacctctgtagcataaagcaggttacattacttacatgactt 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gcccaactcacaataggtcacctctgtagcataaagcaggttacattacttacatgactt 614
Query: 499 tcagctcctgatgttaagaataaggataacccaggtgtggtagcacacacctttaatccc 558
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 613 tcagctcctgatgttaagaataaggataacccagatgtggtagcacacacctttaatccc 554
Query: 559 agaactcaggaggcagagacaagtgactctccgagtgtgtgaggtcagcctggtttacat 618
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 553 agaactcaggaggcagagacaagtga--ctccgagtgtgtgaggtcagcctggtttacat 496
Query: 619 tcagagtttcagaac 633
|||||||||||||||
Sbjct: 495 tcagagtttcagaac 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
