BAC Information

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BAC

Clone NameMSMg01-479D14
Chromosome2 (Build37)
Map Location 24,643,527 - 24,643,764
singlet/doubletsinglet
Overlap genenone
Upstream geneHnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b
Downstream geneEhmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479D14.T7 (MSMg01no479_d14.b1)MSMg01-479D14.TJ (MSMg01no479_d14.g1)
ACCAG560155AG560156
length981746
length of high quality
(start - end)		---238 (71 - 308)
definitionCHROMAT_FILE: MSMg01no479_d14.b1 PHD_FILE: MSMg01no479_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:08 2005CHROMAT_FILE: MSMg01no479_d14.g1 PHD_FILE: MSMg01no479_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTTGAATTCGCGTGCTACTTTTAGGGCTTCACTTTTCCCAATAACGAGG
TCGCGTTAAGTCAATTTTTTCCCAACATAAATGGTATGCTCTATCTATCC
ACACAGATCTCGATTGCCCTCCTCTCCGTGCATGCATCCTGTCACACTGC
ACCGTTAGTATCGCTCGTTCTATATATATAAGCCAAATCTTTCCGTCTAA
AACAAATAAAAAACCACACTTTGCTATCTATGTGACAGACTCCTCCATCG
ACTCAGCCTGTACTCGATTAGCTAACCGAGGTTTAAACAGCTATGCCTCA
CCTTTGTGTAATTCTCGATCCGTTTCACGCTTACACAACTCCATGCTTCG
TTACACCTACCCTCCCAGTATCGTACAACCATGTCGGTAGCTTTATTTTT
TCAGCACTCAGTACCTCCGCTTTTGACCACCTTACTCGCCACATTATACT
TCCCCCATTACCCTTCAATTCCGTCCACCCAGGTATCACACTCCCACCGT
ACAACTTTTAACCCCATTTACACCTCTCCATTTGCCACACATTACCTCAC
TTTGCTGCAATTTTGTCGCACTGTAACCACCCCCGACCCAATAATTACAA
CGTTCCTCTTATTATGTTGGCATTTCCCTGGCATAATAACGTCTCTCGTC
CGGCAAACCCTCAACTTGATTTTATGTCTCCCTTAATCTCTTGCTCATTT
TCTATACCCTATTACGGAAACGTATCATCATATATGGTCTTAATAGCAGC
CCTCCTCTTCTTCCACACTTCATCTTTTTTTTCCTCCCCCTTTTATTTCC
CACGCCCACCATTTACTTGCCCTCGCCGCCTATATTTTTATATCCCAGTC
TCATAACCTTGCCACCCAACCCGCCTTCCAAGAAGGGCTCACACATTAAT
TANATCCGTTCCCGCATACCTACAATCCATCCCAGTTACATGCAACCCAA
TATATATCTATACTAATCTATATCGCATATG

CGATGCTGTGGGTAGGCNGGGGGACGCCGGTTCAAAACAGGGGGNGAACT
ATAGAATGTCAAAAAAAAGGCTTTCTAGGGGTGGGGTAGGGAGGGAAAGG
TCAATACAGAGATGCTCTACAGACAAGAACAGACAACCCAGATCAAAGCT
AGGTTGCATTATAAGTCACTGGCTGACTTCTCTACAGTCTAGAACAGACA
AAACAACTTGTGATGGAAGGAATCAACACTGGAGACAACTTGATGTTGTG
GCAGCTGCCTGGAAGAAGCCAGGGCATTGACTGAGTGAAGGAATAGTAAG
ATTCCTTGGTTTATCTTATGCCAGAATTTGTGTAGCCAGAATGACAAAAG
ACAAAAGTCTATAAACCATGCCTTGGTAAAACCTCGTCAATTTGGAGTTA
CCACACACCACCCACTAGCCTCCATTTGTATCCAAGAGCAATCCTTAAAA
CCAATACGGTACAGAACTGCCGCTGGTGAACGTGCCTATCACCCCAGCGA
GGAGACTGCCTAGGGGGAAAAGGGAATTAAAAACCTCGCCGAACAGATTA
TTCTCAACATAAACATAATAGAAATGTGGCGATAGAGCACTTAGGTGCAA
CGTCTTGGGTCCAGTCTCCCTCTGGCTCTCCTTCTCCCTCTCTTATTCGG
GCCACTACGTATTCCGGGATAGCTTAGCTGTTCCTATTTTCACATAAACT
CATTTGTCTCTATCTTCAATGCGCTCTTATTGATCGTCACGTCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_d14.g1 MSMg01no479_d14.g1 CHROMAT_FILE:
MSMg01no479_d14.g1 PHD_FILE: MSMg01no479_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:08 2005
         (238 letters)



>mm_chr2_24643327_24643964
          Length = 638

 Score =  429 bits (222), Expect = e-125
 Identities = 234/238 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttctaggggtggggtagggagggaaaggtcaatacagagatgctctacagacaagaac 60
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ctttccaggggtggagtagggagggaaaggtcaatacagagatgctctacagacaggaac 260

                                                                       
Query: 61  agacaacccagatcaaagctaggttgcattataagtcactggctgacttctctacagtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacaacccagatcaaagctaggttgcattataagtcactggctgacttctctacagtct 320

                                                                       
Query: 121 agaacagacaaaacaacttgtgatggaaggaatcaacactggagacaacttgatgttgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 agaacagacaaaacaacttgtgatggaaggaatcaacactggagacaacttgaggttgtg 380

                                                                     
Query: 181 gcagctgcctggaagaagccagggcattgactgagtgaaggaatagtaagattccttg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagctgcctggaagaagccagggcattgactgagtgaaggaatagtaagattccttg 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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