BAC Information

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BAC

Clone NameMSMg01-479E17
Chromosome2 (Build37)
Map Location 154,511,849 - 154,512,387
singlet/doubletsinglet
Overlap geneChmp4b
Upstream geneDnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341
Downstream geneLOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479E17.T7 (MSMg01no479_e17.b1)MSMg01-479E17.TJ (MSMg01no479_e17.g1)
ACCAG560209AG560210
length734758
length of high quality
(start - end)		545 (70 - 614)539 (78 - 616)
definitionCHROMAT_FILE: MSMg01no479_e17.b1 PHD_FILE: MSMg01no479_e17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:14 2005CHROMAT_FILE: MSMg01no479_e17.g1 PHD_FILE: MSMg01no479_e17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAGGTTTCGCAAACTCTTCTGTATGTTGGCCCTCCAGTTGC
TCTTGGACTAGCTGTTCTAGTGCCTGTAACTTTTCTTTTGTCATAACCAT
TGTTCTTCCCAGTTTGCCACATGGTAGGGCAGCTGGTGATGTACTAGCAA
TGGCGCCCCCATATAGAGTCAGCCTCTGCTGTGTCGTGCATAATGGACAG
CCTGGACAGTCTAAAGAACAGTTGTAAACGTTTTATAGGCCTTTTTTATT
AGGACCTTCTCTTTTATAGCCTGTCTCTAAAGTTGCAGGGTGCTAATCTG
TGCTTCCTACTGTTAAAATAGATCTCTTCCCATAGATTTATGGCTGTATT
AGCCATTTTCTGTTTGGCCTTCTGGTCCTGTGCATTTAATCCATTTTAGA
CTTTGTTTTAACTGAGATAATGTCCCCAATTCCTAGGAGCTATGCCGATG
CCCTTTGGTTCCAGGAGTCTTATGATAATACAGTTACATCTGCTCCTGTC
TCCACTAACCCTTTGATCTCAGTTCATCTACATGTAATTTTAACTTTGTT
TTTTTTAATTATTTATAGTAGTTTGCCAAAATATTTGTTTTTTGATATCT
TTAGAATCTCTAGTTTGTCCATAGGAGTTCCTTTATCTCTCTTAAATAGT
TTAAGCTTTGAGCAGCCCTGTCATGTCAGGCTTT

CCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCCTGCCTGAACTGTAGTAT
AAGTTTTCTCAAACTCCCACTACTTCAAATAGATAGCCAGGTGGAATGGA
GGGAGTCTTACTTGGACAGTGTTCAGAAAGAAGTGTGTCATTTGGCCCAT
GGAGCACTAGGTTCCCCCAGGTTCCCTCCACTGCGACTTCCCACAGTTGT
AAGGCATAGGAAGTGAAGTGCTGTGATACCTGTGTTTGCACATGTTCCTG
TGGGCCAGTGCTGACCAAATGTGTTGCTTTATTTGTGAAACATTTGAGGG
GTTTCTCAGAGTGTAGCTGTCAGGTAATTTAAAAATACAGACTTTAGAAG
GGATAGGAGAAAAAACATCCACGGTCCCTGCCACACAGCAGCCTGGGGAG
GCCACTGCTTTCTGGCTAAGCTTTCTAAGCCTGCAGAAGGAGGGTGACCC
TGGAGCCAGGGTGTTTGCTGGGCCTTTCCTTAGGTTTTACATACTTACCT
TAATAGTGAGGGGCTTGCAAGAGATCCTGTTATATGAACCAATAAGACAG
GGAGACGTGTACCACACCTGGTACTCCTACATAGAACATGTATCTTCCTC
TGGTTACTCTGATATGCTCATTGCAAGTGGACAGTATCATTAAATTTTAA
AAAAAAAGCATTTAGGACTCTTTATTTAGCTACCTTAAGTTTTAGGAAAG
AAACCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_e17.g1 MSMg01no479_e17.g1 CHROMAT_FILE:
MSMg01no479_e17.g1 PHD_FILE: MSMg01no479_e17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:14 2005
         (539 letters)



>mm_chr2_154511649_154512587
          Length = 939

 Score = 1027 bits (531), Expect = 0.0
 Identities = 537/539 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagcctgcctgaactgtagtataagttttctcaaactcccactacttcaaatagatagc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 caagcctgcctgaactgtagtataagttttctcaaactcccactacctcaaatagatagc 260

                                                                       
Query: 61  caggtggaatggagggagtcttacttggacagtgttcagaaagaagtgtgtcatttggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggtggaatggagggagtcttacttggacagtgttcagaaagaagtgtgtcatttggcc 320

                                                                       
Query: 121 catggagcactaggttcccccaggttccctccactgcgacttcccacagttgtaaggcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catggagcactaggttcccccaggttccctccactgcgacttcccacagttgtaaggcat 380

                                                                       
Query: 181 aggaagtgaagtgctgtgatacctgtgtttgcacatgttcctgtgggccagtgctgacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaagtgaagtgctgtgatacctgtgtttgcacatgttcctgtgggccagtgctgacca 440

                                                                       
Query: 241 aatgtgttgctttatttgtgaaacatttgaggggtttctcagagtgtagctgtcaggtaa 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgggttgctttatttgtgaaacatttgaggggtttctcagagtgtagctgtcaggtaa 500

                                                                       
Query: 301 tttaaaaatacagactttagaagggataggagaaaaaacatccacggtccctgccacaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttaaaaatacagactttagaagggataggagaaaaaacatccacggtccctgccacaca 560

                                                                       
Query: 361 gcagcctggggaggccactgctttctggctaagctttctaagcctgcagaaggagggtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcagcctggggaggccactgctttctggctaagctttctaagcctgcagaaggagggtga 620

                                                                       
Query: 421 ccctggagccagggtgtttgctgggcctttccttaggttttacatacttaccttaatagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccctggagccagggtgtttgctgggcctttccttaggttttacatacttaccttaatagt 680

                                                                      
Query: 481 gaggggcttgcaagagatcctgttatatgaaccaataagacagggagacgtgtaccaca 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaggggcttgcaagagatcctgttatatgaaccaataagacagggagacgtgtaccaca 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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