BAC Information

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BAC

Clone NameMSMg01-479H13
Chromosome2 (Build37)
Map Location 127,164,018 - 127,164,645
singlet/doubletsinglet
Overlap geneDusp2, Astl
Upstream geneAtp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7
Downstream geneAdra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl, Bcl2l11, LOC100043424
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479H13.T7 (MSMg01no479_h13.b1)MSMg01-479H13.TJ (MSMg01no479_h13.g1)
ACCAG560344AG560345
length768750
length of high quality
(start - end)
643 (75 - 717)671 (74 - 744)
definitionCHROMAT_FILE: MSMg01no479_h13.b1 PHD_FILE: MSMg01no479_h13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:29 2005CHROMAT_FILE: MSMg01no479_h13.g1 PHD_FILE: MSMg01no479_h13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGAGTCCGCG
GAATCACCATTCCCCAAAGAATATATGGACAAAACAAAATGGACTTACCT
TTTCCTTTTGGGGGGGCAGAACATCCTGGGGAGGGGAGGGAGCAGATGTG
GGAAAACTGGGAGGTGAGCACAATCAGGGTGCTTGATGTGAGATTTCCAA
ATAATTCATTAAAAAAAAAATGATACAATTCCTGAGGAAGGCTCAGAACA
ACCCTAGCTCTTGAGTGCTTTACCCAGAGCAGAGAAAATGGGCGCCAGGG
GTAGGTTATGCACCCTTCTTTCTTGGAGCCAGTGCCCTCTGATCTAAATG
CCCTCAGTCAACACATACCTGCACACCACACACTGGGTAAATGTGGGGTC
TGATCAGGGATGCACACAGCTGCTGTGAGGCTGAGGCCGACCTCGGCCTT
CCTAACCCTCCCAGTTCAACCACAGGCTAGAACCTGTATGGGAAAGAGCC
CAGGACAGGCCAGCCCAGGCCAGCCCAGGCCAGCCCAGGCCAAGGCAGAC
CACTCAGCCATCGCAGGCACAGACTTGAGACCAGACAATGTGGTACTGCT
CTTTTTTTAAACAAAACACTGTTTTTATTGACACAACCTCAATGTTCTAT
ATAAATATAAAGTGCTGTTTCCAACGCCCCTCCCTGGCCCACAGGGCCGG
GAGGAAGTTGGGGAGAGAGCGTTAAATGTCAGTTGAACACAAATAACTTT
TCAGCACCAATTACAGCG
CGATGCAGTGNGAGGCCTGGCGGCCGCCTGTTTCACAAATGGGAGGTGAA
CTATAGAAGTTTCAGCAACAATCTTTCTGCCTCCCAGATGTCTTTACCCT
CTCCTATAGGCCATGTGTTCCATGGTGAAGCCGTTTTCAAAACTAACTTT
GACTTATAATATGAAGCTGCTGAATGCACTGGTCACACTGTGGAAAGTAA
ACAAGCATGGCCTCTTCCCTCTGATGTCACTTTGCAGCAGTTATGTTTTC
TGGTTCACGATCCAGCTCCAACAGGATGCTTCAGACCTCACTACGGTAAA
AAGAACGGTCTTCATTCTTATTGTTGCTTTGCAGTTGTGGGGATTCCATC
TGACCTTCAACTAGGAACATTTAGTCTACAAAGTAATAACATACTCAAAA
CCCACTATAGAGCTGGGAATGGTGGCCCACGCCTTTATTCCCAGCACTCG
GGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGTCTGGTCTACAA
AGTGAGTTCCAGGACAGCCAGAGCTATACAGAGAAACCCTGCCTGGAAAA
AATTAAATGTAATTATACAAATAATTTTCCAGTGAAAATCAGGTGCTTGA
GGATTGGTCTCGGCAGTACTTATGCTTATGGAGGCACTCCTCAAAGAAGA
AAGAAATAAAATCTCATTAGCATAAATGTCTGCAATCAATTTAGATGATA
GGAATGAGTAGAAGCCCCACCCCCCAAAATAAACCACACCTGCACTGAAG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_h13.b1 MSMg01no479_h13.b1 CHROMAT_FILE:
MSMg01no479_h13.b1 PHD_FILE: MSMg01no479_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:29 2005
         (643 letters)



>mm_chr2_127164018_127165063
          Length = 1046

 Score = 1089 bits (563), Expect = 0.0
 Identities = 608/629 (96%), Gaps = 14/629 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggacaaaacaaaatggacttaccttttccttttgggggggcagaacatcctggggagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 atggacaaaacaaaatggacttaccttttccttttgggggggcagaacatcctggggagg 569

                                                                       
Query: 61  ggagggagcagatgtgggaaaactgggaggtgagcacaatcagggtgcttgatgtgagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggagggagcagatgtgggaaaactgggaggtgagcacaatcagggtgcttgatgtgagat 509

                                                                       
Query: 121 ttccaaataattcattaaaaaaaaaa---tgatacaattcctgaggaaggctcagaacaa 177
           ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||
Sbjct: 508 ttccaaataattcattaaaaaaaaaaaactgatacaattcctgaggaaggctcagaacaa 449

                                                                       
Query: 178 ccctagctcttgagtgctttacccagagcagagaaaatgggcgccaggggtaggttatgc 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ccctagctcttgagtgctttacccagagcagagaaaatgggcgccaggggtaggttatgc 389

                                                                       
Query: 238 acccttctttcttggagccagtgccctctgatctaaatgccctcagtcaacacatacctg 297
           ||||||| | |  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 acccttcatccagggagccagtgccctctgatctaaatgccctcagtcaacacatacctg 329

                                                                       
Query: 298 cacaccacacactgggtaaatgtggggtctgatcagggatgcacacagctgctgtgaggc 357
           ||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 328 cacaccacacactaggtaaatgtggggtctgatcagggatgcacagagccgctgtgaggc 269

                                                                       
Query: 358 tgaggccgacctcggccttcctaaccctcccagttcaaccacaggctagaacctgtatgg 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tgaggccgacctcggccttcctaaccctcccagttcaaccacaggctagaacctgtatgg 209

                                                                       
Query: 418 gaaag-----agcccagg--a---caggccagcccaggccagcccaggccagcccaggcc 467
           |||||     ||||||||  |   ||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaaagagcccagcccaggccagcccaggccagcccaggccagcccaggccagcccaggcc 149

                                                                       
Query: 468 aaggcagaccactcagccatcgcaggcacagacttgagaccagacaatgtggtactgctc 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 aaggcagaccactcagccatcgcaggcacagacttgagaccagacaatgtggtactgctc 89

                                                                       
Query: 528 tttttttaaacaaaacactgtttttattgacacaacctcaatgttctatataaatataaa 587
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  -ttttttaaacaaaacactgtttttattgacacaacctcaatgttctatataaatataaa 30

                                        
Query: 588 gtgctgtttccaacgcccctccctggccc 616
           |||||||||||||||||||||||||||||
Sbjct: 29  gtgctgtttccaacgcccctccctggccc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1046
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1036
Effective search space:   655788
Effective search space used:   655788
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)