BAC Information

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BAC

Clone NameMSMg01-479J13
Chromosome2 (Build37)
Map Location 38,447,921 - 38,596,226
singlet/doubletdoublet
Overlap genePsmb7, LOC674251, Nr5a1, Nr6a1
Upstream geneStrbp, LOC639491, Dennd1a, LOC100040947, Lhx2, Nek6
Downstream geneOlfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479J13.T7 (MSMg01no479_j13.b1)MSMg01-479J13.TJ (MSMg01no479_j13.g1)
ACCAG560438AG560439
length733736
length of high quality
(start - end)		408 (326 - 733)657 (78 - 734)
definitionCHROMAT_FILE: MSMg01no479_j13.b1 PHD_FILE: MSMg01no479_j13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:39 2005CHROMAT_FILE: MSMg01no479_j13.g1 PHD_FILE: MSMg01no479_j13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,595,819 - 38,596,226)(38,447,921 - 38,448,573)
sequence
NTTAATCTATAATTTGCGGCCGCTAAAAGAATCACTTTCAAAGAGGATGN
CGCGGAATCAAGGTACTCCAACAACTTAGTGAGACCCTGTCTCAAAATAT
GTTAAAAGAGGGCTAGGATATACCACAGTAGCAAAGCACCTGCCTAGCAT
TAGCAAGGTGCTAGGTGTGACGTCAGTACAAAAACTTCATCCAATCCATA
ACTACTTAGTCCTATTCTGCTGGCCACATTGGTGAGCCCACACAGAATCC
TTGTCTTGTGGGTGGAATTTAATAGCATAGACATGTATGTAACCTTTAAT
TCCTTCCCATTCCTTGTNGTTTTACAGACTTCATGACCAGAGAACAACTT
ATCTCCAAGTTATTTTCTTTGAGCACGTATTCAACCTGCAATGGCTTTTC
CTGATGTGAAGTTTTTCTCTCCAGTAGGTCTGTGGAACTAAATGGATTCA
TGGCATTCAGGGATCAGTACATGGGGATGTCAGTGCCTCCACATTATCAA
TACATACCACACCTTTTTAGCTATTCTGGCCACTCACCACTTTTGCCCCC
ACAAGCTCGAAGCCTGGACCCTCAGTCCTACAGTCTGATTCATCAGCTGA
TGTCAGCCGAAGACCTGGAGCCATTGGGCACACCTATGTTGATTGAAGAT
GGGTGAGTTAATTCTGTCCTGTTTGGCCCATTACAGTTCCAAAATGTCCC
TACCACGCATCGGTTGTATCCCAGCTTTGTCCT

TTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACCTCACAGAATCATCTAATCAG
GAACTGTTTCTGAACAGTCCCACAAAAGCCTTACCAGAAACAAGGAAAGG
TGGTATACAGGAGATGCTAGTGGAGACTGCTCCCACACAGAAAGCAAAAC
CCAATCACCGGCTTAACAAATGCAACCTCATTCCAACTCTGTTTATTAAC
CAACCTTAGATGTGCATGTGCACGCTCGCTGGGAGTGCCCTGCTTGCTCC
CCAGCTCGGGGCTTCCTATTTTCTCCCCCTTCTCTTTTCTCCACTTAACT
ACCGCCTTTGTCTGTTCTTGTCCCTTTAGCTAGTGCTCTGAGCAAGACAC
ATGGGACAGAAAAAAATAACCAACAGGCAGCACTTAGCACCACAGATCTT
AATTCCCAAGGGAGGATGACGCTGAGAGCATGGAAATATATGAGCTGTTG
TTACACATGCCTGTCTAGTCTGTATTCATTCACCTGGACAGGAGGTGCTA
CAGAGTGCAGGTGACTCTCCCTCTGCTTTGTAAACATTTGCACATGGAAG
TAAATCCCAGCAAAAGCACAGTTCAAAAAGTACAAAGAATTTGAAATGTA
TTATGTATAATTTGATCCACTTGTAGAATCATCATGTATACAGACGTGTA
AAGGCTTTGACAAATTGAGGAGACATTTAACGCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_j13.b1 MSMg01no479_j13.b1 CHROMAT_FILE:
MSMg01no479_j13.b1 PHD_FILE: MSMg01no479_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:39 2005
         (408 letters)



>mm_chr2_38595619_38596426
          Length = 808

 Score =  789 bits (408), Expect = 0.0
 Identities = 408/408 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacttcatgaccagagaacaacttatctccaagttattttctttgagcacgtattcaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 agacttcatgaccagagaacaacttatctccaagttattttctttgagcacgtattcaac 549

                                                                       
Query: 61  ctgcaatggcttttcctgatgtgaagtttttctctccagtaggtctgtggaactaaatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ctgcaatggcttttcctgatgtgaagtttttctctccagtaggtctgtggaactaaatgg 489

                                                                       
Query: 121 attcatggcattcagggatcagtacatggggatgtcagtgcctccacattatcaatacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 attcatggcattcagggatcagtacatggggatgtcagtgcctccacattatcaatacat 429

                                                                       
Query: 181 accacacctttttagctattctggccactcaccacttttgcccccacaagctcgaagcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 accacacctttttagctattctggccactcaccacttttgcccccacaagctcgaagcct 369

                                                                       
Query: 241 ggaccctcagtcctacagtctgattcatcagctgatgtcagccgaagacctggagccatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggaccctcagtcctacagtctgattcatcagctgatgtcagccgaagacctggagccatt 309

                                                                       
Query: 301 gggcacacctatgttgattgaagatgggtgagttaattctgtcctgtttggcccattaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcacacctatgttgattgaagatgggtgagttaattctgtcctgtttggcccattaca 249

                                                           
Query: 361 gttccaaaatgtccctaccacgcatcggttgtatcccagctttgtcct 408
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gttccaaaatgtccctaccacgcatcggttgtatcccagctttgtcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no479_j13.g1 MSMg01no479_j13.g1 CHROMAT_FILE:
MSMg01no479_j13.g1 PHD_FILE: MSMg01no479_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:40 2005
         (657 letters)



>mm_chr2_38447721_38448777
          Length = 1057

 Score = 1224 bits (633), Expect = 0.0
 Identities = 648/653 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctcacagaatcatctaatcaggaactgtttctgaacagtcccacaaaagccttaccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctcacagaatcatctaatcaggaactgtttctgaacagtcccacaaaagccttaccag 260

                                                                       
Query: 61  aaacaaggaaaggtggtatacaggagatgctagtggagactgctcccacacagaaagcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacaaggaaaggtggtatacaggagatgctagtggagactgctcccacacagaaagcaa 320

                                                                       
Query: 121 aacccaatcaccggcttaacaaatgcaacctcattccaactctgtttattaaccaacctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacccaatcaccggcttaacaaatgcaacctcattccaactctgtttattaaccaacctt 380

                                                                       
Query: 181 agatgtgcatgtgcacgctcgctgggagtgccctgcttgctccccagctcggggcttcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 agatgtgcatgtgcacgctcgctgggagtgccctgcttgctccccagctcggggcttccg 440

                                                                       
Query: 241 attttctcccccttctcttttctccacttaactaccgcctttgtctgttcttgtcccttt 300
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accttctcccccttctcttttctccacttaactaccgcctttgtctgttcttgtcccttt 500

                                                                       
Query: 301 agctagtgctctgagcaagacacatgggacagaaaaaaataaccaacaggcagcacttag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agctagtgctctgagcaagacacatgggacagaaaaaaataaccaacaggcagcacttag 560

                                                                       
Query: 361 caccacagatcttaattcccaagggaggatgacgctgagagcatggaaatatatgagctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caccacagatcttaattcccaagggaggatgacgctgagagcatggaaatatatgagctg 620

                                                                       
Query: 421 ttgttacacatgcctgtctagtctgtattcattcacctggacaggaggtgctacagagtg 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 ttgttacacatgcctgtctagtctgtattcattcacctggacaggaggtgctgcagagtg 680

                                                                       
Query: 481 caggtgactctccctctgctttgtaaacatttgcacatggaagtaaatcccagcaaaagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caggtgactctccctctgctttgtaaacatttgcacatggaagtaaatcccagcaaaagc 740

                                                                       
Query: 541 acagttcaaaaagtacaaagaatttgaaatgtattatgtataatttgatccacttgtaga 600
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acatttcaaaaagtacaaagaatttgaaatgtattatgtataatttgatccacttgtaga 800

                                                                
Query: 601 atcatcatgtatacagacgtgtaaaggctttgacaaattgaggagacatttaa 653
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atcatcatgtatacagacgtgtaaaggctttgacaaattgaggagacatttaa 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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