BAC Information

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BAC

Clone NameMSMg01-479N14
Chromosome2 (Build37)
Map Location 81,895,823 - 81,896,145
singlet/doubletsinglet
Overlap geneZfp804a
Upstream geneLOC100040704
Downstream geneLOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292, LOC433440, Fsip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479N14.T7 (MSMg01no479_n14.b1)MSMg01-479N14.TJ (MSMg01no479_n14.g1)
ACCAG560630AG560631
length1,430756
length of high quality
(start - end)
---323 (323 - 645)
definitionCHROMAT_FILE: MSMg01no479_n14.b1 PHD_FILE: MSMg01no479_n14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:59 2005CHROMAT_FILE: MSMg01no479_n14.g1 PHD_FILE: MSMg01no479_n14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATAAGCGTAATCTGGGACGTANCTGTGTGCTATGTATAGGGTTAATCCC
CTAATATGCAAGTGCGTGTTATACGAACGAAGCGGTACTTATCCCTCCGA
AGATAGGGGAGTGACGACCACAACTGTGTGACACGGTATGTACGGTATAT
CGCCCGAAGTGCGAGGTGTTTTCACTTATTATGAAGGGTGACGATGACAA
TATGACGGGGTTCGACGCGCTCGGGCCAGACATATTATCCGCGCACCGAT
ATGCTGCGTACTATCTGCTGATTTCATATACTACGTCAAGTTTTTGTGGT
GTTTTTCTGGGTCACCTGATCGGTGAGCGGCGGCGATCGCTTCACGTAGC
AGCGGTGGGGTGTTAATACTGGGGTGGCTATATAACTTATTATGGTGATC
GCGCGAGCGTATAGGGCGCAGGTGGAGTCGCAGAGAGGGTAGACGAAACG
AAGAGACGAATAGGAGCGCGAAGCGATTTCACATTATCGTTNTTATTCCC
TCCACCGGTATGTGCTAGACAGGAGCCAAGGTTAGGAAAGAGAGCGAGGA
GCGTAGATAGAAAAAAAAGCGGACAGGACCAGGTGCGCGACTGAGTATTA
CGCGCGACTACAACTAACAACCTGATGTGATCTGGTCCCAGCGCATATGG
AAGCGAAAACGGTTTAGAAGTGCCAATCCACGTCGTTGGTACAGAAATTA
GCGGAACCGAATGTCATATGCGTAGTTTAGCTGCGCGCGTGATAGATCGT
CTATGTAGACGGTGGTGAGCGGCCCAGCTCTGTTCTATAATCGCAAACCC
CATACAGATGTTTGTATTACCCCTCGGAATTAACCGCCATGTCGGTCGAG
ACGGGTCATCTTATATCTTCGTCTATACACGCTGCTTGTTTGTATGCTTT
GTGCGGACACGCCGTATAGCCGGAGTATAAACGGGTTCGGCGGTGTGTAG
TGATGAGAAGGCAGCGCAATCCGTATGGTTGTAGTGTTAGCCGTGGGTGA
GGTGGCTTATCGAATATACGTACGATATAGGCGGCTAACGCCAGAAGCGC
ACGAAGAGAGCGCGAAGACCGTGCGATTATTGAATGATTACTAGATGGCA
GCACGCGGGCGCGCGGCGTCGACGAGGCGCCGCGAGATTCTCGTGATTAT
ATATATTGCTCACCGGCGTATTACTTTACGACGCACGCGCGGCGCCGATA
TATATCTATTCGCGCCCGCACGCNTGAGCATATAATTGAATCACACGGTG
CGCTAGAATATAGTGCGGGCGCACAGGATCTGCGCTGAGNGAGGCGAGAT
GTTGTTGATAAGGACACACATAATCTATGTCAGTCGTATACCCGCTATAT
AGAGCAGACATAATAGTCGACATGAACGGTACACACGCCGATAGATATGA
TACATACTGTATCGTATATACGAAGTGGAN
CGATGATGTGNGTAGGCCTGGGGGNCGCCTGGTCAAAAACAGTAGGTGAA
CTATAGAATTACCTAAAAAATTCACAGAAAAATGAGCAGTTATCTGCCAG
CCCTGAACTTGTTACTGCGCTGTTCATTGTGCTTCTTCAGTCTCCTTAGA
CTTCCCAGGGACCAGATTTGCTCGTGGTGACTTATTTGCTGTGTATTTGA
AGCTAATGAGTCCTTCCTCCCTCATGTTGACAAAGGGCAGATTAAATATT
AGTTTTGCCGGTGTAACCTCATGATTAAAATGGGCACATTAAAAGCAGCC
ACCTAAATGATATGGATAAATCAAAATATATGTAGATGTCAGAACAAGAA
GCAGGATAGACACAGTATGAAATGAAGCTCACAAGGTTTCTCATGACTGT
AATGACTGAAACTTGTAGGGGTGTTCGTGTCAGTCCTTTCCAGACTTTTA
TAAGCTATCCTGTTTGAATTTATTGTGTGTGTGTGTGTGAATTTCATGAT
TTAAATATTCACAATTGTAATCAACTCTATTTAACACAATTTCTTTATAG
GGAATATGTGTTTATGTGCTCTAAGTACTTTTTAATGAGTTTTGTCAGTA
AGAAAAATGAGATATATACTCTCCCATAAGTATAGCTGGAGAGTCTATAT
ATATTGATAAGGAATTATGTTAAGTAATAAAGACTTGTTCAACTTATATA
ATGATGCATTCTGTCAGGATCTAAAATTATTTGAGCATTTACTATATGCT
ATAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_n14.g1 MSMg01no479_n14.g1 CHROMAT_FILE:
MSMg01no479_n14.g1 PHD_FILE: MSMg01no479_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:59 2005
         (323 letters)



>mm_chr2_81895623_81896345
          Length = 723

 Score =  601 bits (311), Expect = e-176
 Identities = 320/323 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatatatgtagatgtcagaacaagaagcaggatagacacagtatgaaatgaagctcac 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 aaaatatatgtagatgtcagaacaagaagcaggagagacacagtatgaaatgaagctcac 260

                                                                       
Query: 61  aaggtttctcatgactgtaatgactgaaacttgtaggggtgttcgtgtcagtcctttcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggtttctcatgactgtaatgactgaaacttgtaggggtgttcgtgtcagtcctttcca 320

                                                                       
Query: 121 gacttttataagctatcctgtttgaatttattgtgtgtgtgtgtgtgaatttcatgattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacttttataagctatcctgtttgaatttattgtgtgtgtgtgtgtgaatttcatgattt 380

                                                                       
Query: 181 aaatattcacaattgtaatcaactctatttaacacaatttctttatagggaatatgtgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 aaatattcacaattgtaatcaactctatttaacacaatttctttatagggaatatatgtt 440

                                                                       
Query: 241 tatgtgctctaagtactttttaatgagttttgtcagtaagaaaaatgagatatatactct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgtgctctaagtactttttaatgagttttgtcagtaagaaaaatgagatatatactct 500

                                  
Query: 301 cccataagtatagctggagagtc 323
           ||||||||||||| |||||||||
Sbjct: 501 cccataagtatagttggagagtc 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)