BAC Information

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BAC

Clone NameMSMg01-479O10
Chromosome2 (Build37)
Map Location 92,399,763 - 92,400,039
singlet/doubletsinglet
Overlap genenone
Upstream geneCkap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1, Phf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775
Downstream geneLOC100043205, Chst1, Syt13, LOC100042784, Trp53i11, C230071H18Rik, Tspan18, LOC100042789, LOC639658, Cd82
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479O10.T7 (MSMg01no479_o10.b1)MSMg01-479O10.TJ (MSMg01no479_o10.g1)
ACCAG560670AG560671
length772743
length of high quality
(start - end)
277 (327 - 603)344 (74 - 417)
definitionCHROMAT_FILE: MSMg01no479_o10.b1 PHD_FILE: MSMg01no479_o10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:03 2005CHROMAT_FILE: MSMg01no479_o10.g1 PHD_FILE: MSMg01no479_o10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTTGTCTCGACACTGACAATAATCATCTCAGCCCCGCTTTT
TAGATTATTCTCAAGGTCCACTGAGAGCTCAGACATAAAAGTGCTTTGAT
ATCAGGAGAAAACTGGAGGAGGAAAAAAAAAGTAGTGTATAAAAATCTGT
GAGTTTTCACCAGGTCTTAGGGTGCTCGCTCTCCAGTCCCAACAGGTAGC
ATTTCAACCTGGACCATTAAACATTTGTTGTGCCTTCAGGAAGATGCGCA
GCAGGTTGGGGCACTAGAGTTTTTGACTGCATGCTTAGATAGTGGAGCAG
TTCCATGCAAACAGAGCCAGGTCAGTCCTCTGTGCTACTACAATAATGAG
TAGCAGGACTCAAAGGAAAATGGTCACTGAGGGTAAAGATTTTCAGCCCT
AGCTGGGCCTCTTAGTTATACAACTTCTTTGAGCCTCTATTTCCTCATGT
GTAAAATGGGGACAGGCCCTCTAATTCACAGTAGGGTCGCAGATTTGAAA
GAGCTATGTTTCATAACTTTTGGAAAGCTCCTGGTAACTGTTCTCATTCG
TAATAATAATAATTCCCCCACGCCACCACGTTATCCCTAAAGCTAAGGAG
GCAGCATACAATGCCTCTTAATGAGAAACGCACCATCCACCTTACAACAG
GCAGCAGTGGGCCCTCAGCGAGCTCACTGGGCATGGAATTGAGAGAGAAC
AGCTACTTGTCTACTTGCACGC
NCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGCCACGAACAATTCCTGGGCCTTTAGGATTCAAAACCC
GTGGGCTTAAAAAAATTAATATTATCTGTATGTTTTACCTGCATGCAAAA
CCGTGCACCACGTGAGTAACTGGTGTTCTCAGAAACCAGCCAGGATTCCC
TGCAACTGGAGTCACAGATGGTTTGGGCTGCCACTGGGTGCTGGGAATCA
AACCTTGGGACCTTTGCAGAAGCAGCCAGTACTGTCTGAGCGGCTCCCCA
GCCTCTGTTTTGTTTTTATCNATTAGGGAGTCTTTATATTACTCCCCACC
AAGACTTTGCTTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTT
TGAGACAGGGTTTCNCTNTGTANCCCTGGCTGCCCTGNAACTCACTCTGT
CGACTAGGCTGGCCTCCNACTCAGAAATCCACCTGCCTCTGTTTCTCAAC
CGCTGTGATTAAAGGTGTGCACTACCATTTTTTGTTCTACACTTTTACTA
TATGTATACACGAACATTGTTAATTTTGGGGCATATATATTAATCCTCTC
AATATTACTGGAAGTCTTATAATCGGAACACGCACCCCATGGCTTTTTTT
TTTTTTTCCACACACTCTCTCTTTTCCCCCCCTTTCATCTTTTTTTCTCC
TTTTCCCATCTCTTTTCTTCCCTCTTCCCCCACTTTATTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_o10.b1 MSMg01no479_o10.b1 CHROMAT_FILE:
MSMg01no479_o10.b1 PHD_FILE: MSMg01no479_o10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:03 2005
         (277 letters)



>mm_chr2_92399703_92400379
          Length = 677

 Score =  536 bits (277), Expect = e-157
 Identities = 277/277 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgcatgcttagatagtggagcagttccatgcaaacagagccaggtcagtcctctgtgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctgcatgcttagatagtggagcagttccatgcaaacagagccaggtcagtcctctgtgct 278

                                                                       
Query: 61  actacaataatgagtagcaggactcaaaggaaaatggtcactgagggtaaagattttcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 actacaataatgagtagcaggactcaaaggaaaatggtcactgagggtaaagattttcag 218

                                                                       
Query: 121 ccctagctgggcctcttagttatacaacttctttgagcctctatttcctcatgtgtaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ccctagctgggcctcttagttatacaacttctttgagcctctatttcctcatgtgtaaaa 158

                                                                       
Query: 181 tggggacaggccctctaattcacagtagggtcgcagatttgaaagagctatgtttcataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 tggggacaggccctctaattcacagtagggtcgcagatttgaaagagctatgtttcataa 98

                                                
Query: 241 cttttggaaagctcctggtaactgttctcattcgtaa 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 97  cttttggaaagctcctggtaactgttctcattcgtaa 61


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)