BAC Information

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BAC

Clone NameMSMg01-480D09
Chromosome2 (Build37)
Map Location 84,553,795 - 84,554,261
singlet/doubletsinglet
Overlap geneZdhhc5
Upstream geneItgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19
Downstream geneClp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480D09.T7 (MSMg01no480_d09.b1)MSMg01-480D09.TJ (MSMg01no480_d09.g1)
ACCAG560906AG560907
length726727
length of high quality
(start - end)		600 (49 - 648)579 (80 - 658)
definitionCHROMAT_FILE: MSMg01no480_d09.b1 PHD_FILE: MSMg01no480_d09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:27 2005CHROMAT_FILE: MSMg01no480_d09.g1 PHD_FILE: MSMg01no480_d09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTATCGTCTGCTACTTGGGCACCTACGTCGATCTGTAATAATA
CTCTTTTTAAACTTCTTCTTGGATCTTTCCTTCATAGCATGTATTCATTC
TTCTATATGACATCTCCATTTCTATATATTCAAATTTAGTGTTCTGTGCT
ATAAGGTTTGGTTATTTTAACAAATAATACATGTGCTGTCCACTGCACTG
CTCCAAAGGAACTACTTATATCAAACCTTATGAAAGTCTTCAAACTACAC
ATCTTGAATTGTTTGTTGTTGTTTTGAGACAGGATCTCTGTACATAACTG
TTGCTGCCCTGGAATTCACTTTGTAAGACCAAGCTGATTTCTAACTCAGA
GTTCTGACTTCCTGTGCCTCCCAAGTGCTGGGATTGAGGTCGAGAGCTAC
CACACCTGGCTCTGTATTGTTTGTTTTATACATACATATTTTCACTCAGT
GATTTTTTTCCCCCTCAGTCAGCATGTGTCACGAACATTCTTGTCCACTT
TAGTGATACTGTTGTGGATACACCAGCTTGTGACTGATGAACCACACTCG
CCTTTCCGGTTTCGTCCCTTCTCTTTCTGCACCACATTCCTTTGATAAGA
CTTGGTGTGTTGATATTTATACCCAATAAATTATTTTATCTTGTCCCTTC
TAATATCTATCTTAACATTTCAGACG

NCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTTCCAGTACACACGCTGT
GGCTCAAAGTCATTCAGAACTCCAGTTCCAGGAGATCTGAAGCTGCTACA
CACACACACACACAAATAAATAAATAAATAAATAAATAAATAAATAAATA
AATAAATAAATAAATAAATAAATTTTAAATGAGATGGCTCAGTGGGTAAG
GTGCTTGTCATTAGACCTGGAGTTTCATTTTGATTCTCAGGCTCCCCATG
GTGGAAGGAGAGAACTGAACCTCACATGTTGTCCTTTGGTTTCGACACAT
TCACCCTGGCATGTGCATCCACACACATATACAAAAACTAATTAAAAACT
AATTTAAAAAAACAAAGAAAAATGGATTGTTAAAATGGGTAAGCTAGAGA
GATGGCTCAGCAGTTAAGAGCACTGACTGCTCTTTCAGAGGTCCTGAGTT
CAATTCCCAGCAACCACATGGTGGCTCACAGACATCTGTAATGGGATCTG
ATGCCCTCTTCTGGTGAGTGTGAAGACAGCTACAGTGTACTAATATAAAT
AAATAAATAAATATATCTTTTTTAAAAGTGGGCATTGTAGTGCACATGCC
TGTAATCCCAGCATTTGGAAAGTGGAGGAAGCAGAAAGATCAGGAGTTCA
GGATCAGCCTTGGCTATACAGTACACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_d09.b1 MSMg01no480_d09.b1 CHROMAT_FILE:
MSMg01no480_d09.b1 PHD_FILE: MSMg01no480_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:27 2005
         (600 letters)



>mm_chr2_84553795_84554794
          Length = 1000

 Score =  880 bits (455), Expect = 0.0
 Identities = 464/467 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatcgtctgctacttgggcacctacgtcgatctgtaataatactctttttaaac 64
           ||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gaattctatcgccaggtacttgggcacctacgtcgatctgtaataatactctttttaaac 408

                                                                       
Query: 65  ttcttcttggatctttccttcatagcatgtattcattcttctatatgacatctccatttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ttcttcttggatctttccttcatagcatgtattcattcttctatatgacatctccatttc 348

                                                                       
Query: 125 tatatattcaaatttagtgttctgtgctataaggtttggttattttaacaaataatacat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tatatattcaaatttagtgttctgtgctataaggtttggttattttaacaaataatacat 288

                                                                       
Query: 185 gtgctgtccactgcactgctccaaaggaactacttatatcaaaccttatgaaagtcttca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gtgctgtccactgcactgctccaaaggaactacttatatcaaaccttatgaaagtcttca 228

                                                                       
Query: 245 aactacacatcttgaattgtttgttgttgttttgagacaggatctctgtacataactgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 aactacacatcttgaattgtttgttgttgttttgagacaggatctctgtacataactgtt 168

                                                                       
Query: 305 gctgccctggaattcactttgtaagaccaagctgatttctaactcagagttctgacttcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 gctgccctggaattcactttgtaagaccaagctgatttctaactcagagttctgacttcc 108

                                                                       
Query: 365 tgtgcctcccaagtgctgggattgaggtcgagagctaccacacctggctctgtattgttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 tgtgcctcccaagtgctgggattgaggtcgagagctaccacacctggctctgtattgttt 48

                                                          
Query: 425 gttttatacatacatattttcactcagtgatttttttccccctcagt 471
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47  gttttatacatacatattttcactcagtgatttttttccccctcagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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