BAC Information

Click to search

BAC

Clone NameMSMg01-480E13
Chromosome2 (Build37)
Map Location 82,012,884 - 82,013,333
singlet/doubletsinglet
Overlap geneZfp804a
Upstream geneLOC100040704
Downstream geneLOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292, LOC433440, Fsip2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480E13.T7 (MSMg01no480_e13.b1)MSMg01-480E13.TJ (MSMg01no480_e13.g1)
ACCAG560962AG560963
length730721
length of high quality
(start - end)
329 (327 - 655)451 (123 - 573)
definitionCHROMAT_FILE: MSMg01no480_e13.b1 PHD_FILE: MSMg01no480_e13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:32 2005CHROMAT_FILE: MSMg01no480_e13.g1 PHD_FILE: MSMg01no480_e13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCG
GAATTCAGTGTTTTTCCAGGACTTACCACAACACTTTATTTCACAGTTCA
AAATACTTGACACTATTGGTATGACAGATTCTGGATGGCAAGAAATCAAG
AAAACACAAACAAGATGGAAAAACAAACTTCAGGACATTGAAGCAGAAAA
GGTTAAAAAAAAAGAATATGGACTTTCTTATGTATCCTGCAGCATTAAGA
ATTTCACTGTCTGTTCCACACTTTGTCTCTGGATCTTCTCCCATGGGTAC
TTTGATCCCTCTTCTAATTTTTTCTAAGAATCCACACTGTGGTCTTCCTT
CTTAAACCTCATATAGTCCGGGAATTGTAGGCTGGGTATTCAGAACTTCT
GGGCTAATATCCGCTTATCAGTGAGTGCATACCATGTGTGCTCTTTTGTG
ATTGGGTTACCTCACTCAGGTTGATAGTCTTTAGGTTCATCCATTTGCCT
AAGTTTTCTTTACTTTTTTTGTTTGTTTGTTTGTTTGTTTTTTAATATTT
TATTTTATTTTAATTAGGTATTTTCTTCATTTACATTTCCAAAGCTATCC
CAAAAGCCCCCCATACCCTCCCCCATTCCCCTACCCACGCACTCCCACTT
CTTGGCCCTGGNGTTCCCCTGTACTGAGGCATATAAAGTTTGCCAGAACA
ATGAGCCTCTCTTTCCACTGATGGCCAACT
ACAATATAGTGGGTAGCCTGGGGGNCGCCTGGTGCAAAAATTGAGNGTGA
ACTATAGAAGTTTCCAAAAACATCTTTAAAACAGAAAAGTTTATGCTTCA
CCATTTAGCCCTTAGGAAGTGCCACATCTGCAACATACATGTAACACTAT
TACATATGTAAAAATTACCTTAAATGCTATGAATTTTTTAAAACCTCAAA
TCATGTCTTCTGCTTTAATATTTCTCAAACTGTATGTCAACTCACATGGT
TGTAATATACATTCTTTTGAATCCAATTTTCACATGCAAATCTGTGGAAA
TCATCATTCTAAATACACTAGTTTATAACAAATCAGTATGTGTTGTCTCA
AAACTATATAGAAAATTGCACGTCTAAGTTGGTCAAATTGTTTGATCAAG
TAAAATCACCACAAATAAGAGCTTATTGCATTTCATTATTTTTTTCATCT
AGGTTAATGTCATTTTAGACTAAAAAATGTAAAAAACTTAAGAACTCACT
ATTTCAAAATTTAAATAATTAAATCTATTTGTAGAGTTATAACCATTTAC
TTTACAATCATATTTGAACTGTGTAGGTTATACATTAAATAAAACACTAC
AGACAAGTTTTTTTAAACTGAGTAATTTTGAAGAAGCAAAGCTAAAATTC
ATCATCTATACTGCATTAAATAACTGTAAAGAAGCTGAAAAAAAATGCCA
GTGCAGTGCTAATCTTTGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_e13.g1 MSMg01no480_e13.g1 CHROMAT_FILE:
MSMg01no480_e13.g1 PHD_FILE: MSMg01no480_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:32 2005
         (451 letters)



>mm_chr2_82012683_82013533
          Length = 851

 Score =  824 bits (426), Expect = 0.0
 Identities = 444/450 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   acatctgcaacatacatgtaacactattacatatgtaaaaattaccttaaatgctatgaa 61
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 202 acatctgcaacatacatgtaacactattacatatgtaaaaataaccttaaatgctatgaa 261

                                                                       
Query: 62  ttttttaaaacctcaaatcatgtcttctgctttaatatttctcaaactgtatgtcaactc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttttttaaaacctcaaatcatgtcttctgctttaatatttctcaaactgtatgtcaactc 321

                                                                       
Query: 122 acatggttgtaatatacattcttttgaatccaattttcacatgcaaatctgtggaaatca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 acatggttgtaatatacattcttttgaatccaattttcacatgcaaatctgtggaaatca 381

                                                                       
Query: 182 tcattctaaatacactagtttataacaaatcagtatgtgttgtctcaaaactatatagaa 241
           ||||||||||||||||||  | ||||||||||||||||||||||||||||||| | ||||
Sbjct: 382 tcattctaaatacactagagtgtaacaaatcagtatgtgttgtctcaaaactagagagaa 441

                                                                       
Query: 242 aattgcacgtctaagttggtcaaattgtttgatcaagtaaaatcaccacaaataagagct 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aattgcacgtctaagttggtcaaattgtttgatcaagtaaaatcaccacaaataagagct 501

                                                                       
Query: 302 tattgcatttcattatttttttcatctaggttaatgtcattttagactaaaaaatgtaaa 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tattgcatttcattatttttttcatctaggttaatgtcattttagactaaaaaatgtaaa 561

                                                                       
Query: 362 aaacttaagaactcactatttcaaaatttaaataattaaatctatttgtagagttataac 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aaacttaagaactcactatttcaaaatttaaataattaaatctatttgtagagttataac 621

                                         
Query: 422 catttactttacaatcatatttgaactgtg 451
           ||||||||||||||||||||||||||||||
Sbjct: 622 catttactttacaatcatatttgaactgtg 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)