Query= MSMg01no480_e23.b1 MSMg01no480_e23.b1 CHROMAT_FILE:
MSMg01no480_e23.b1 PHD_FILE: MSMg01no480_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:34 2005
(672 letters)
>mm_chr2_76453458_76454529
Length = 1072
Score = 1268 bits (656), Expect = 0.0
Identities = 667/671 (99%), Gaps = 2/671 (0%)
Strand = Plus / Plus
Query: 3 gaattcaggtcctcttgcc-gagcagcaagtgctctcaacaacttggccatctctccagc 61
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcaggtcctct-gcaagagcagcaagtgctctcaacaacttggccatctctccagc 261
Query: 62 cagtccctgctctttctttttgatgaacttctaagaatcagtgtgaactctttaagtaga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cagtccctgctctttctttttgatgaacttctaagaatcagtgtgaactctttaagtaga 321
Query: 122 atgtactaatttccattatcagctcctggcttttattacagatgtgcatcctgcagtcac 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atgtactaatttccattatcagctcctggcttttattacagatgtgcatcctgcagtcac 381
Query: 182 tgtagctcctggattgtggctttcaactgctcattaagctcttctctgctctttccgatg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgtagctcctggattgtggctttcaactgctcattaagctcttctctgctctttccgatg 441
Query: 242 cttttcatctcaactacattttgccagatattaaaattgcttctctaggtacttctgatt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cttttcatctcaactacattttgccagatattaaaattgcttctctaggtacttctgatt 501
Query: 302 cctaaaaactgctacagctttcttccacattgatatttcctgcctttttgtattcttgat 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cctaaaaactgctacagctttcttccacattgatatttcctgcctttttgtattcttgat 561
Query: 362 cctaaataggtcttccatggataaatattgctagaccatttgtatttttaattgagtaag 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cctaaataggtcttccatggataaatattgctagaccatttgtatttttaattgagtaag 621
Query: 422 gtaacttgtcttagtttgtgagttttagtcatttaagttttaaaacacatgttagggccc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gtaacttgtcttagtttgtgagttttagtcatttaagttttaaaacacatgttagggccc 681
Query: 482 aggggcacagcccagtggtatagcagttgcccaatcagtttcttctacaacttctgccaa 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aggggcacagcccagtggtatagcagttgcccaatcagtttcttctacaacttctgccaa 741
Query: 542 ccaaatgttttagatctcacacagttctgagcttatgctctctcctaacaccctgngtta 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 742 ccaaatgttttagatctcacacagttctgagcttatgctctctcctaacaccctgggtta 801
Query: 602 aacctcttgaccacagtacaatcctcatctcatccccacagaccagcctcccattccagt 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 aacctcttgaccacagtacaatcctcatctcatccccacagaccagcctcccattccagt 861
Query: 662 gatgctgagcc 672
|||||||||||
Sbjct: 862 gatgctgagcc 872
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space: 703044
Effective search space used: 703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no480_e23.g1 MSMg01no480_e23.g1 CHROMAT_FILE:
MSMg01no480_e23.g1 PHD_FILE: MSMg01no480_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:34 2005
(581 letters)
>mm_chr2_76614447_76615427
Length = 981
Score = 957 bits (495), Expect = 0.0
Identities = 534/551 (96%), Gaps = 10/551 (1%)
Strand = Plus / Minus
Query: 1 tggaagttgaagaaggaactgatgttaacattgtggccaaaatcaaaggtgtgccattcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 545 tggaagttgaagaaggaactgatgttaacattgtggccaaaatcaaaggtgtgccgttcc 486
Query: 61 caactctcacttggttcaaggctccgccaaagaaacccgacagcaaagagcctgttgttt 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 caactctcacctggttcaaggctccgccaaagaaacccgacagcaaagagcctgttgttt 426
Query: 121 atgacacccatgtcaacaaacaggtggtggacgacacttgcactttagtcattcctcatt 180
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 425 atgacacccatgtcaacaaacaggtggtggatgacacttgcactttagtcattcctcagt 366
Query: 181 ctcgccggagtgacactggcttatattctatcacagccgtaaacaacctggggacagcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ctcgccggagtgacactggcttatattctatcacagccgtaaacaacctggggacagcat 306
Query: 241 caaa----ttttattatactcaatgtccttggtaatgattgtactgtttggttaaaacat 296
|||| || | |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 305 caaaggag----atgagactcaatgtccttggtaaagattgtactgtttggttaaaacat 250
Query: 297 ggttttgttaatcataaataaaatttggctttaaaatcattcaactaacaaaatattctt 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 249 ggttttgttaatcataaataaaatttggctttaaaatcattcaactaacaaaatattc-t 191
Query: 357 tttttaaaaaaaatttttttttgtaggtcgtcctggcccccctgtgggacccataaagtt 416
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tttttaaaaaaaa-ttttttttgtaggtcgtcctggcccccctgtgggacccataaagtt 132
Query: 417 tgaatctatttcagcggatcagatgacattatcttggcttccacctaaagatgacggtgg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tgaatctatttcagcggatcagatgacattatcttggcttccacctaaagatgacggtgg 72
Query: 477 gtctaagattacaaactatgtcattgagaaaagagaagccaacagaaagacatgggtacg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 gtctaagattacaaactatgtcattgagaaaagagaagccaacagaaagacatgggtacg 12
Query: 537 tgtctccagtg 547
|||||||||||
Sbjct: 11 tgtctccagtg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
