BAC Information

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BAC

Clone NameMSMg01-480H19
Chromosome2 (Build37)
Map Location 128,742,728 - 128,943,410
singlet/doubletdoublet
Overlap geneZc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2
Upstream geneAcoxl, Bcl2l11, LOC100043424, LOC100043729, LOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik
Downstream geneChchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480H19.T7 (MSMg01no480_h19.b1)MSMg01-480H19.TJ (MSMg01no480_h19.g1)
ACCAG561116AG561117
length732727
length of high quality
(start - end)
381 (328 - 708)372 (323 - 694)
definitionCHROMAT_FILE: MSMg01no480_h19.b1 PHD_FILE: MSMg01no480_h19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:48 2005CHROMAT_FILE: MSMg01no480_h19.g1 PHD_FILE: MSMg01no480_h19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,943,075 - 128,943,410)(128,742,728 - 128,743,086)
sequence
AACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAGAGGGC
GGAATTCTTTTTTCTCCCACACCTGGGTTAACAAAACAGAGTTTAATGAA
GAATAAATGTATGTCTTATCTCAGCTTCCCTGTCACGAGAAGTCAGGCAG
AACAGGAAAGAAAAAGATCTAAGAGATGACGTCATTGGGTAATAAACCTA
GCACTCCAGAGCCACAGTTGTCCATCCCAGTCTCAGCCACAGACGAGGCC
ACTCAGCCCTCGCGAAATGGCAAAGGAGTGTTTTCAAAAAGGCAAGTTAT
TCTCCTATGTTTGAAACATGATTTTTTAAATTTCCTTCCAAACAATTACA
CGAAAAGAATCCTATATTTGGAAATGAACAAACAAGCAACAGGGATGCAG
AAAGGGCTACACAGCTAAGAATACATACAGTAGGCACTGTATTCACAAGT
GCATACCAAAATGCAGACATGCACATACACACACACATATATTTTTAAAA
TCACAAAGCACACACACACATACAACATCAACAACAAACCCAAAACAGGG
CTGGAGAAATGGCTCGGTGGTTAAGAGCACTTACTGGTCTCACAGAGGAC
CAAGTTTCAGTTCCCAGCACCCATGACAGGTGGCTTATAACTGCCAAGAG
CTCTCCCAGAGATGCAGCGCACTCCTCTGACCTTCACAGACAATGCATGC
ATGCATAAAAAACAAATCTTAAAATTATTTTT
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCAAGAAATTCCAGCGACCAGGCTTTCCTCCTCCGTGA
ACTGCAGTGACTGCTTCAATGTACATTTGGCTAAAATTAGGATCATTTCT
GTTGATTCTAGGTTTACCTAACTGAGTTCAGCTACATGAGGAAGTTTAAA
TTGGCTTGCAATCTGGAGACATATGGGAGACTGGAATGAGCTGGTGTGTC
AGCAGACACAGGTCAGGAATCAGAGATTCATTCGAAAAGTCCAAGATTAA
AGTCTAGTGTATATTTTTTATGTAAAATCTGCCTGCCAAGGACTACATGT
AGGATATTTTGCATAGGATATATCTGGGATGTAGAGTATATGTTTATTTA
AGAATCATGGGGATTATAAAACCATTTCTTATTTATGGAGTCTCTTTAAA
AGATAGTTTTAAAATCTTGGATCCAAGAAAAGTATAAAGATCTGAAAGAC
ACAGGAGACAAGAGCTTCCTGCCAACAGTCACATGCGGGCTGGTGACTGT
TTACTGTCTCATGCTTCTGTGTAGGATTGCAATACCCATGAGATGAGCCT
GGCCATGCCAGGAAGGGAAGGAGGCTTCTGAGATTAAAGTGCTGGAGTAC
AGCATACAATCAGTCTTTATCCAGAAACACACACACACACACACACACAC
TCACACACACACACACACACTCACACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_h19.b1 MSMg01no480_h19.b1 CHROMAT_FILE:
MSMg01no480_h19.b1 PHD_FILE: MSMg01no480_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:48 2005
         (381 letters)



>mm_chr2_128943075_128943855
          Length = 781

 Score =  650 bits (336), Expect = 0.0
 Identities = 336/336 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatttccttccaaacaattacacgaaaagaatcctatatttggaaatgaacaaacaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aaatttccttccaaacaattacacgaaaagaatcctatatttggaaatgaacaaacaagc 277

                                                                       
Query: 61  aacagggatgcagaaagggctacacagctaagaatacatacagtaggcactgtattcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aacagggatgcagaaagggctacacagctaagaatacatacagtaggcactgtattcaca 217

                                                                       
Query: 121 agtgcataccaaaatgcagacatgcacatacacacacacatatatttttaaaatcacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 agtgcataccaaaatgcagacatgcacatacacacacacatatatttttaaaatcacaaa 157

                                                                       
Query: 181 gcacacacacacatacaacatcaacaacaaacccaaaacagggctggagaaatggctcgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 gcacacacacacatacaacatcaacaacaaacccaaaacagggctggagaaatggctcgg 97

                                                                       
Query: 241 tggttaagagcacttactggtctcacagaggaccaagtttcagttcccagcacccatgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  tggttaagagcacttactggtctcacagaggaccaagtttcagttcccagcacccatgac 37

                                               
Query: 301 aggtggcttataactgccaagagctctcccagagat 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 36  aggtggcttataactgccaagagctctcccagagat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no480_h19.g1 MSMg01no480_h19.g1 CHROMAT_FILE:
MSMg01no480_h19.g1 PHD_FILE: MSMg01no480_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:48 2005
         (372 letters)



>mm_chr2_128742515_128743286
          Length = 772

 Score =  679 bits (351), Expect = 0.0
 Identities = 357/359 (99%)
 Strand = Plus / Plus

                                                                       
Query: 14  ccaaggactacatgtaggatattttgcataggatatatctgggatgtagagtatatgttt 73
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ccaaggactacatgtaggatattttgcataggatatatctgggatgtagagtatatgttt 273

                                                                       
Query: 74  atttaagaatcatggggattataaaaccatttcttatttatggagtctctttaaaagata 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 atttaagaatcatggggattataaaaccatttcttatttatggagtctctttaaaagata 333

                                                                       
Query: 134 gttttaaaatcttggatccaagaaaagtataaagatctgaaagacacaggagacaagagc 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 334 gttttaaaatcttggatccaagaaaagtataaagatctgaaagacacaggagagaagagc 393

                                                                       
Query: 194 ttcctgccaacagtcacatgcgggctggtgactgtttactgtctcatgcttctgtgtagg 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttcctgccaacagtcacatgcgggctggtgactgtttactgtctcatgcttctgtgtagg 453

                                                                       
Query: 254 attgcaatacccatgagatgagcctggccatgccaggaagggaaggaggcttctgagatt 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 attgcaatacccatgagatgagcctggccatgccaggaagggaaggaggcttctgagatt 513

                                                                      
Query: 314 aaagtgctggagtacagcatacaatcagtctttatccagaaacacacacacacacacac 372
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 514 aaagtgctggagtacagcatacaatcagtttttatccagaaacacacacacacacacac 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)