BAC Information

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BAC

Clone NameMSMg01-480K18
Chromosome2 (Build37)
Map Location 142,495,041 - 142,495,319
singlet/doubletsinglet
Overlap geneKif16b
Upstream geneLOC668913, LOC668914
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480K18.T7 (MSMg01no480_k18.b1)MSMg01-480K18.TJ (MSMg01no480_k18.g1)
ACCAG561257AG561258
length729720
length of high quality
(start - end)
373 (330 - 702)279 (369 - 647)
definitionCHROMAT_FILE: MSMg01no480_k18.b1 PHD_FILE: MSMg01no480_k18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:03 2005CHROMAT_FILE: MSMg01no480_k18.g1 PHD_FILE: MSMg01no480_k18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATGGG
CGGAATTCTTAGAGCTTTCTAGAAAGAAATAAAAAGGTCCTGAAGTCATA
ACATTTGAGACCTGTGTCATCAGATCGTGTTGTGTAGGTTGCTGGGAGAA
AGGGGAAGACTCAGTAGAGTGTTTGTGTGGCACAGCCCCATGTGTGCAGT
AAATCCCAGGTGCTGCTGTTCCTCATAATTTCAGTCATCTTGTAGGGAGG
CAGCAGTGACCCCCAAGCTGGCTAGTTATGGTAACTCCACACAAGCTAGA
GTCATCTGAGAGAAGGGAACCTTGTATTGAGAACATCCTTCCATAAGGCT
GGGCTGTAGGCAAGCATGCAGAACACTTTGTTAACTGATCCAGCTCAATA
TAGGTGGTGCCGAGCCTGGGTGGGTGAGCCTGGATTTTACAAGAAAGCAG
GCTGAGCAAGCCAGTAATCAGAGCCTCTCTGTGGCCTCTATGAGCTCCTG
CCTCCAGGTTCCTACCCCATTTGAGTTCCTGTCCTGATTTCCTTCAGTGA
CAGACTATGGTGTGGAAGGGTAATCCAAAGAAACTGTTTCCGCCCTAATT
TGGTTTTGGTTATGGTGATTCATAATAGTAATGATAACCCCAACTAAGAC
AGGCCACCTAGTGTGGAGAGGCAGGAGGGTAACCGGAGAGTAGTCTGCCC
GCCTAAGTCTGGCTTGGAGACCANGTCTG
GCGATGCTGTGNGAGGCCTGGNGGNCGCCCGGCTTCATCACGGGGTGAAC
TATAGAAGGATTACAAAATCCGGTGGTCCTGGAACAGCAATCCCGTGGCT
TACCAGAAGAAGCCATGTTACAGTCAAGTGCCTGGGATAGAGTTTTCTGG
TGTTTTCAGTATTTGAAAGTAGGAGATTAAGATTAATGTTATAGACAGAG
AGGAAAACAATACACACAGACTAACAACAGAAATAATGCCTGACAAGTAT
TTTTCAAACAGGACTAATCTTGAGATGCAGCAGACACTTAAGGAATAAAA
TGATGGGAAGCCAATCCGCTCAATTGAAACCCAAATTTACTAGAGCATAC
AGAGCATATTTACAGTCCACTCTATCCGGAAGCTCTTAAGTGGAAACAGT
TGCTTTACTTTGATGGGATAAGATTAATATAGAATTAGAATAAAGCACTA
TAAGAATTTCAAATGTAATGTGATTCTTTCAAATTCTAGATTTTAATAGT
GTTCATTTAGAAACAGGAGATGAAGATGGATATAGTGGTACATGGCCATC
ATCAGAGCACTGGGGAGGTGGACACAGGATGCTCCAGGTCAACAGAGGCT
ACACAGTGAGACCTCATCATACAAGTTGCTGTCATTCACATTGCTCCTCT
TCTATGCTCCCCCTGTTCCATCCCCAGCTGGTAACAGCACTGAGTGCTCA
GTCAGAGGGAGAGTGACAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_k18.g1 MSMg01no480_k18.g1 CHROMAT_FILE:
MSMg01no480_k18.g1 PHD_FILE: MSMg01no480_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:03 2005
         (279 letters)



>mm_chr2_142494841_142495519
          Length = 679

 Score =  524 bits (271), Expect = e-153
 Identities = 277/279 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctatccggaagctcttaagtggaaacagttgctttactttgatgggataagattaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctatccggaagctcttaagtggaaacagttgctttactttgatgggataagattaat 260

                                                                       
Query: 61  atagaattagaataaagcactataagaatttcaaatgtaatgtgattctttcaaattcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagaattagaataaagcactataagaatttcaaatgtaatgtgattctttcaaattcta 320

                                                                       
Query: 121 gattttaatagtgttcatttagaaacaggagatgaagatggatatagtggtacatggcca 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttttaatagtgttcatttagaaacaggagatgaagatggatatagtggtacatggcca 380

                                                                       
Query: 181 tcatcagagcactggggaggtggacacaggatgctccaggtcaacagaggctacacagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 tcatcagagcactggggaggtggacacaggatgctccaggtcaaccgaggctacacagtg 440

                                                  
Query: 241 agacctcatcatacaagttgctgtcattcacattgctcc 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agacctcatcatacaagttgctgtcattcacattgctcc 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)