BAC Information

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BAC

Clone NameMSMg01-480P11
Chromosome2 (Build37)
Map Location 151,483,952 - 151,484,493
singlet/doubletsinglet
Overlap geneLOC668929
Upstream geneAcss1, Vsx1, Entpd6, LOC100043605, Pygb, Abhd12, Gins1, LOC668925, 4930519N13Rik, LOC668926, Nanp, LOC433486, LOC381390, 4930442J19Rik, LOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph
Downstream geneBC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480P11.T7 (MSMg01no480_p11.b1)MSMg01-480P11.TJ (MSMg01no480_p11.g1)
ACCAG561482AG561483
length721718
length of high quality
(start - end)
555 (86 - 640)239 (78 - 316)
definitionCHROMAT_FILE: MSMg01no480_p11.b1 PHD_FILE: MSMg01no480_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:26 2005CHROMAT_FILE: MSMg01no480_p11.g1 PHD_FILE: MSMg01no480_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AACCATXXXXXXXXXXXXXXXXXXXXXXXXXATTGCAAAAACGAGGGGCG
GAANTCATAACATTACAAAAACATGAATCTGTGNCAAGATATTTTAGTGT
TTGTGGCATTGTGTGACATGTGATAGATAGCACACGCAGTGCAGACCCAA
GGTTCAGACCCAAGGCCACTCTAAAGTGGTACAATGAAGCATGGGTGAGC
CCTGCCAGAAATACATTTGATTGTTAATTGGTTTTCCTTGTTGCCAGAGT
TTTCACTTACTACCCTTCCTAATTCAGTTACATGACCTCATATGGAATAA
AAACAAACAGTTTAATTATTCGTTTTAAGGTGTCTTATGTAAAATAATGA
TAGTACATGTTTAGTGAATAAAGATATTTGTTTATTCTTTTAAAGACAAT
CTATTGCAAGATGAGAGTACCTTTTTAGAAGAAGCATATTTGAACAAAGA
AGTGTCTCTGCCTCCTGAGCTTCCCAGTAGTATAATGGGTATGTTGAAGT
CGTTTGCATAGAAAATATATAGATACAGATGTTCAAATCAAGTCTCAGAA
CTTGTAAGTCTCAGCAGTACTGCAATGGAGAATACCGTCCTTCAGGTGCT
TTTATAGCACAGGAAGTTAGATTCTGAAAAGGGAGTTAACAAGGACTGGT
TTTCATAGATCACACTTATTCTTCCCAAGCTTTTCAAATCCTAAAAAAAA
AAGGTATGCTAATATGGGGAA
TTTTCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAAAAGTGGGGT
GAACTATAGAATTGCCCAAAAAATTCTGTCAGATCAACACTCAGGGCCCC
ATCAAATCTGAGGGAAGCAGTGATGGAAGACACAATCTGGCTAATAAGGC
GGTTAAGGTTGGTGTAGGTTGGGCGCTCAATGTCGAGGTTTCTACGACAG
ATGTCATAGATGGCCTCATTGTCTACCATGAAGGCACAATCAGAGTGCTC
CAGAGTGGTATGGGTGGTGAGGATAGAATTGTAGGGCTCAACCACAGCAG
TGGAAACCTGGGGCCTTGTTTAATGGAGAACTCCAGCTTGGACTTCTTTC
CGTAATCCACAGAGAGCCGCTCCATCAGCAGGGAGGTGAAGCCAGAGCCA
GTTCTCCCGCCAAAGCTGTGGAAAACCAAGAAGCCCTGGAGACCTGTGCA
CTGGTCAGCCAGCTTGCGAATCCTGTCCAGGACAAGGTCAATGATCTCCT
TGCCAATGGTGTAGTGGCCACGGGCATAGTTATTGGCAGCATCCTCCTTG
CCTGTGATGAGCTGCTCAGGGTGGAAGAGCTGGCGGTAGGTGCCAGTGCG
AACTTCATCGATGACCGTGGGTTCCAGGTCTACAAACACTGCCCGGGGCA
CATGCTTGCCAGCTCCTGTCTCACTGAAGAAGTGTTGAAAGAGTCATCTC
CTCCCCCAATGGTCTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_p11.b1 MSMg01no480_p11.b1 CHROMAT_FILE:
MSMg01no480_p11.b1 PHD_FILE: MSMg01no480_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:26 2005
         (555 letters)



>mm_chr2_151483540_151484494
          Length = 955

 Score =  895 bits (463), Expect = 0.0
 Identities = 527/559 (94%), Gaps = 21/559 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagatattttagtgtttgtggcattgtgtgacatgtgatagatagcacacgcagtgcaga 60
           ||||||||| ||||||||||||||||||||||||||    ||||||||||||||||||||
Sbjct: 954 aagatatttcagtgtttgtggcattgtgtgacatgt----gatagcacacgcagtgcaga 899

                                                                       
Query: 61  cccaaggttcagacccaaggccactctaaagtggtacaatgaagcatgggtgagccctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 cccaaggttcagacccaaggccactctaaagtggtacaatgaagcatgggtgagccctgc 839

                                                                       
Query: 121 cagaaatacatttgattgttaattggttttccttgttgccagagttttcacttactaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 cagaaatacatttgattgttaattggttttccttgttgccagagttttcacttactaccc 779

                                                                       
Query: 181 ttcctaattcagttacatgacctcatatggaataaaaacaaacagtttaattattc---- 236
           ||||||||||||||| ||||||||||||||||||||||||||||||||||  | ||    
Sbjct: 778 ttcctaattcagttatatgacctcatatggaataaaaacaaacagtttaa-gaatctgga 720

                                                                       
Query: 237 gttttaaggtgtcttatgtaaaataatgatagtacatgtttagtgaataaagatatttgt 296
           |   ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 719 g---taaagtgtcttatgtaaaataatgatagtacatgtttagtgaataaacatatttat 663

                                                                       
Query: 297 ttattcttttaaagacaatctattgcaagatgagagtacctttttagaagaagcatattt 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ttattcttttaaagacaatctattgcaagatgagagtacctttttagaagaagcatattt 603

                                                                       
Query: 357 gaacaaagaagtgtctctgcctcctgagcttcccagtagtataatgggtatgttgaagtc 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gaacaaagaagtgtctctgcctcctgagcttcccagtagtataatgggtatgttgaagtc 543

                                                                       
Query: 417 gtttgcatagaaaatatatagatacagatgttcaaatcaagtctcagaacttgtaagtct 476
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 542 ttttgcatagaaaatgtatagatacagatgttcaaatcaagtctcagaacttgtaagttt 483

                                                                       
Query: 477 cagcagtactgcaatggagaataccgtccttcaggtgcttttatagcacaggaagttaga 536
           |||||||||||||||||||||||| |||||||||||||         |||||||||||||
Sbjct: 482 cagcagtactgcaatggagaatactgtccttcaggtgc---------acaggaagttaga 432

                              
Query: 537 ttctgaaaagggagttaac 555
           |||||||||||||||||||
Sbjct: 431 ttctgaaaagggagttaac 413


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)