BAC Information

Click to search

BAC

Clone NameMSMg01-481E10
Chromosome2 (Build37)
Map Location 67,985,460 - 67,985,905
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1322, Cmya3, LOC621171, LOC227995, B3galt1
Downstream geneStk39, LOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443, Lass6, Nostrin
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481E10.T7 (MSMg01no481_e10.b1)MSMg01-481E10.TJ (MSMg01no481_e10.g1)
ACCAG561720AG561721
length762758
length of high quality
(start - end)
586 (66 - 651)605 (70 - 674)
definitionCHROMAT_FILE: MSMg01no481_e10.b1 PHD_FILE: MSMg01no481_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:52 2005CHROMAT_FILE: MSMg01no481_e10.g1 PHD_FILE: MSMg01no481_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGACAATCCGCGGAATTCAA
CAACTCTTTTCAAGAAATACAGGAGAACACTGCTAAAGAGTTACAAGTCC
TTAAAGAAAAACAGGAAAACACTGCTAAAGAGTTACAAGTCCTTAAAGAA
AAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTATAGAAAAACAGGA
AAACACATCCAAACAGGTGATGGAAATGAACAAAACCATACTAGACCTAA
AAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCGACGCTGGAG
ATAGAAACCCTAGGAAAGATTTCTGGAACCATAGATGCCAGCATCAGCAA
CAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGACTCCATAG
AGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGACCCTA
ACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTACG
GATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGTCCAGCAA
ACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAG
ATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCA
GAAAAGAAATTCCTCCCGACACATAATAATCAGAACACCAAATGCACTAN
NATAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATAT
AAAGGGCAGCCT
AGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCTTGCGAAAATCTTAGTTCTATTTCCTAAACTCAGTTTCTTGCCT
TACATTAATATCACGCTATCTTGGTATATCAATTTATTTTGTATTGACTT
CTAAAATTGTTTGATGCATGTTCTCCAAGTTTACTTATATATTTTTTTAA
ATTGTATTGACTATTCAGTTCAAGGTTTCTTATGTTTCTATGTAAATTTT
AAAGTCAAGCTTCCAATTAAGAGAAAAACAGTGAGGAGTTTAGCTACTCA
ATCTCTGCCACACTCTTGTTATGTCTCCATTTATTTAATATTTTATTAAC
CAGTAACTTATAACAGTATTCGATATATAGCTCTTAGACTATTTTTGCTA
GCAAGTTAAATATTTCAGTATTTTTGATGCTTTAGACAATGCACTGTTTT
AAAATTTCATGTTGAACTGTTTACTGCTATTATAAAGAATTACAAATGAT
TTGTATGTAGATCATATAAAACAGAGGCTCACTGACTCCACTGATGGTGT
CTGGTAGTTTGGAGAGTTTGTTTGGTTATTGTTCTTGGCGTTTTTTTCTA
CCCTTCAGCTCACATTGTCTAGACATAAAGACACTTTTATTTCGTCCACT
TCATTCTCTGAACTTCTGGCTTTTTTGGTTTTGTTTTTTGTTTGTTTGTT
TGCTTTCATTGTACTTGTTAAAACATCCAATAAAATGTTGAACAGAATTG
AATCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_e10.g1 MSMg01no481_e10.g1 CHROMAT_FILE:
MSMg01no481_e10.g1 PHD_FILE: MSMg01no481_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:52 2005
         (605 letters)



>mm_chr2_67985460_67986464
          Length = 1005

 Score =  824 bits (426), Expect = 0.0
 Identities = 441/446 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttctatttcctaaactcagtttcttgccttacattaatatcacgctatcttggtatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agttctatttcctaaactcagtttcttgccttacattaatatcacgctatcttggtatat 387

                                                                       
Query: 61  caatttattttgtattgacttctaaaattgtttgatgcatgttctccaagtttacttata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 caatttattttgtattgacttctaaaattgtttgatgcatgttctccaagtttacttata 327

                                                                       
Query: 121 tatttttttaaattgtattgactattcagttcaaggtttcttatgtttctatgtaaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tatttttttaaattgtattgactattcagttcaaggtttcttatgtttctatgtaaattt 267

                                                                       
Query: 181 taaagtcaagcttccaattaagagaaaaacagtgaggagtttagctactcaatctctgcc 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 266 taaagtcaagcttccaattaagagaataacagtgaggagtttagctactcaatctctgcc 207

                                                                       
Query: 241 acactcttgttatgtctccatttatttaatattttattaaccagtaacttataacagtat 300
           |||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 acactcatgagatgtctccatttatttaatattttattaaccagtaacttataacagtat 147

                                                                       
Query: 301 tcgatatatagctcttagactatttttgctagcaagttaaatatttcagtatttttgatg 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 146 tcgatatatagctcttagactatttttgctaccaagttaaatatttcagtatttttgatg 87

                                                                       
Query: 361 ctttagacaatgcactgttttaaaatttcatgttgaactgtttactgctattataaagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  ctttagacaatgcactgttttaaaatttcatgttgaactgtttactgctattataaagaa 27

                                     
Query: 421 ttacaaatgatttgtatgtagatcat 446
           ||||||||||||||||||||||||||
Sbjct: 26  ttacaaatgatttgtatgtagatcat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)