Query= MSMg01no481_e20.b1 MSMg01no481_e20.b1 CHROMAT_FILE:
MSMg01no481_e20.b1 PHD_FILE: MSMg01no481_e20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:54 2005
(587 letters)
>mm_chr2_130674228_130675213
Length = 986
Score = 785 bits (406), Expect = 0.0
Identities = 429/440 (97%), Gaps = 8/440 (1%)
Strand = Plus / Minus
Query: 155 actgcaggcagtgctacccctgggctgagcaagtcagtaagcagccttcctccatggcct 214
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 986 actgcaggcagtgctacccctggactgagcaagtcagtaagcagccttcctccatggcct 927
Query: 215 ctgtcatggttccagcctctgttcctgcttgagttcccttcatggtgaactggtgagcca 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 ctgtcatggttccagcctctgttcctgcttgagttcccttcatggtgaactggtgagcca 867
Query: 275 caaggtgaact------tt-cctccatcagctgcttttggtgatggtgtttatcacagca 327
||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 caaggtgaactaaagccttccctccatcagctgcttttggtgatggtgtttatcacagca 807
Query: 328 acacacagtgaagtaggacagcttctgtttgccacgctctacacccaggggctgcctaag 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 acacacagtgaagtaggacagcttctgtttgccacgctctacacccaggggctgcctaag 747
Query: 388 agtttgctcaggacttcaaaccagactatttccacagagcagctgttggtgcttctcggg 447
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 746 agtttgctcaggacttcaaaccagactatttccacagtgcagctgttggtgcttctcggg 687
Query: 448 acaggtgaagcctatctggtatttttttgaagaaacctatatctgtactatccatgccaa 507
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 686 acaggtgaagcctatctggta-ttttttgaagaaacctacatctgtactatccatgccaa 628
Query: 508 atgtgtaatggttatgccaaaagatatctggctagtagcatacttaaggtatgaagaaaa 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 atgtgtaatggttatgccaaaagatatctggctagtagcatacttaaggtatgaagaaaa 568
Query: 568 tgcttaagattgatgggaaa 587
||||||||||||||||||||
Sbjct: 567 tgcttaagattgatgggaaa 548
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 986
Length adjustment: 10
Effective length of query: 577
Effective length of database: 976
Effective search space: 563152
Effective search space used: 563152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_e20.g1 MSMg01no481_e20.g1 CHROMAT_FILE:
MSMg01no481_e20.g1 PHD_FILE: MSMg01no481_e20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:54 2005
(579 letters)
>mm_chr2_130513595_130514573
Length = 979
Score = 1027 bits (531), Expect = 0.0
Identities = 558/579 (96%), Gaps = 19/579 (3%)
Strand = Plus / Plus
Query: 1 ttcctctgtgcgagtcttcaggagcttctggcggaaggtgatgtctgagaacatggtggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcctctgtgcgagtcttcaggagcttctggcggaaggtgatgtctgagaacatggtggc 260
Query: 61 aaaggtgcgtgccacctccattgcagtcttggtgcttttctggggacagaggatggatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaggtgcgtgccacctccattgcagtcttggtgcttttctggggacagaggatggatag 320
Query: 121 tacaggcacacccccagcaccacagcagaggacaccctgtctttgccaagtgaggtcaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacaggcacacccccagcaccacagcagaggacaccctgtctttgccaagtgaggtcaca 380
Query: 181 cacaggcagctgggtccataagctcaggcattaatgcaccttgtcactatgtcactattc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacaggcagctgggtccataagctcaggcattaatgcaccttgtcactatgtcactattc 440
Query: 241 cccctaggccagcaagtccccagaaccactgtggatctggtgggtttctttcctttttct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccctaggccagcaagtccccagaaccactgtggatctggtgggtttctttcctttttct 500
Query: 301 ttgagataggctcacactctgtagaccagactggtctagaactatggtgttctccatacc 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 ttgagataggctcacactctgtagaccaggctggtctagaactatggtgttctccatacc 560
Query: 361 ttggctacccaagtgttgggaatacaggcaatgagctgccatgccctgcttagtattttc 420
|||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 561 ttggctacccaagtgttgcgaat-------------------gccctgcttagtattttc 601
Query: 421 tcataattcagacactagcattgtcctaacaagaagaaggattgagggctggggagatga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tcataattcagacactagcattgtcctaacaagaagaaggattgagggctggggagatga 661
Query: 481 tggctcagtggtttagagcactgactgctcttccaaaggtcctgagttcaatccccacgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tggctcagtggtttagagcactgactgctcttccaaaggtcctgagttcaatccccacgt 721
Query: 541 gatggctcacaaccatctgcaatgtgacctgacgccctc 579
|||||||||||||||||||||||||||||||||||||||
Sbjct: 722 gatggctcacaaccatctgcaatgtgacctgacgccctc 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
