BAC Information

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BAC

Clone NameMSMg01-481F04
Chromosome2 (Build37)
Map Location 143,559,751 - 143,560,434
singlet/doubletsinglet
Overlap genePcsk2
Upstream geneKif16b, Snrpb2, Otor, LOC668915, LOC668916
Downstream geneBfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481F04.T7 (MSMg01no481_f04.b1)MSMg01-481F04.TJ (MSMg01no481_f04.g1)
ACCAG561756AG561757
length745728
length of high quality
(start - end)		683 (43 - 725)653 (76 - 728)
definitionCHROMAT_FILE: MSMg01no481_f04.b1 PHD_FILE: MSMg01no481_f04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:55 2005CHROMAT_FILE: MSMg01no481_f04.g1 PHD_FILE: MSMg01no481_f04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTTCCAATTTCGCTTGGAGCTGTGTCTCCTAGTTGACTGCAAAAACAA
TCAAGTTGATAAGATTAACCATTGCAGAGGCTTTTCTACAGAAAGGGGAG
GAGGAAACACCAACAGAGAGCTGCCCCCAGGCAGATGCTCTTTTATTGGG
TTGTAGGAGTGGTTCAGGGTTCACTCGTCATGGGGTATTTCACAAGACAT
TTTCCCTTCTCCTCCATAGGGCTTCTAGCAAAAGGAGAAACGCAATGGCT
GGTTCCTCTTTGAGGAAATCATGGCATCTTGCTGCACTTAGCAGGCATTG
CCTCTGTGCTGAGGATGAGATTCCGGGTCCTTCACACACTGTTGACAGGG
AGGACAGAGGCATGGTTCAGCTTTTATGAAATGGGAAGAACAGGCTCTTT
CATCACCCTGAAGGGCCCGGTTTAGTATTTGCATTTCCTTTATTTTATTT
TTATTTGTAAGTGTACCACATGAGTACAGTGACTTCAGAGGTCTGAAAAG
GGTATCAGATGTCCCCAGAAGTGGAGCTGCAGATGGTTCTGCTAGAGGAG
GTGCTAGGAACCCAGCCCAGGTCCCCTGCAGGAGCAGGAAGTACTCTTAC
CCACTGTGCATCTTTCCATGCCCCGGTATTTATGTTTGTAAAGGTCCTCG
GGGTGCTTTTCCTGAAGTTTGATTATNAGCCGAGCTTTTTTATTT

TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTAATGTGCTTTAAATTGGGCCT
TCAAGCTCACTTGGTTGTCTCCATCTTGAATGGGAGACCCCAGCATGCTG
GACTTCTGCAGAATAAACACTCTTTGCTTTTACATACTATTTGAGTTCAG
GGTATCATTCTTCTGCGAATCATGAACCCTTACAGCAGGAAGTCCTGGGT
TTGATACCCAGCAGTGGTGGGGGTTAGCCTTGTACACTGTATATTCAGTT
GCTGATTTCTGTGCCCAGAGATCTGGTTACACTTGGAACACTAGCATTGA
CATAGTTATTAAACCATCTCCTGGTATCTGACATGTAAAGAATGTTCCCC
AGTTATTGTTGATTGGTTAATCAAGAGCTGACCAGCCTGTGGCTGGGCAG
AGGAGATAGGAAGGCTGGACTTGCATTCCTAGCCAGGGGTCCCGGAGGGA
GAAAGAAGAGATGAAACCATTAGGAAGAGAAGAGGTGGCCATGGGGCAGA
GGGTCCAGGAGGAGTCCTGATGAGATTGCCAAGGGATTCACCATGAGGAC
ACACGTGGAGCTGAGCAAGCCAGGGAGAAACTTGGATTGAAGGCACAGGA
CCACACGGCTGGAAAATAAATACATAGAGGATTAGAATTGATGAATAGCT
GCCCAGTCATAATGCTTAAAGCTTGCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_f04.b1 MSMg01no481_f04.b1 CHROMAT_FILE:
MSMg01no481_f04.b1 PHD_FILE: MSMg01no481_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:55 2005
         (683 letters)



>mm_chr2_143559549_143560633
          Length = 1085

 Score = 1191 bits (616), Expect = 0.0
 Identities = 667/688 (96%), Gaps = 12/688 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttccaa----tttcgcttggagctgtgtctcctagttgactgcaaaaacaat 59
           ||||||||||||||    |   ||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattccttccaagacgt---gcttggagctgtgtctcctagttgactgcaaaaacaat 259

                                                                       
Query: 60  caagttgataagattaaccattgcagaggcttttctacagaaaggggaggaggaaacacc 119
           |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 260 caagttgataagattaaccattgcagaggcttttctacagaaaggggagg-gggaacacc 318

                                                                       
Query: 120 aacagagagctgcccccaggcagatgctcttttattgggttgtaggagtggttcagggtt 179
           ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 319 aacagagagctgcccccaggcggatgctcttctattgggttgtaggagtggttcagggtt 378

                                                                       
Query: 180 cactcgtcatggggtatttcacaagacattttcccttctcctccatagggcttctagcaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 379 cactcgtcatggggtatttcacaagacattttcccttctcctccataggccttctagcaa 438

                                                                       
Query: 240 aaggagaaacgcaatggctggttcctctttgaggaaatcatggcatcttgctgcacttag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aaggagaaacgcaatggctggttcctctttgaggaaatcatggcatcttgctgcacttag 498

                                                                       
Query: 300 caggcattgcctctgtgctgaggatgagattccgggtccttcacacactgttgacaggga 359
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 taggcattgcctctgtgctgaggatgagattccgggtccttcacacactgttgacaggga 558

                                                                       
Query: 360 ggacagaggcatggttcagcttttatgaaatgggaagaacaggctct-t--tcatcaccc 416
           ||||||||||||||||||||||||||| ||||||||||||||||||| |  |||||||||
Sbjct: 559 ggacagaggcatggttcagcttttatggaatgggaagaacaggctctctcatcatcaccc 618

                                                                       
Query: 417 tgaagggcccggtttagtatttgcatttcctttattttatttttatttgtaagtgtacca 476
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 619 tgaagggcccggtttagtatttgcacttcctttattttatttttatttgtaagtgtacca 678

                                                                       
Query: 477 catgagtacagtgacttcagaggtctgaaaagggtatcagatgtccccagaagtggagct 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 catgagtacagtgacttcagaggtctgaaaagggtatcagatgtccccagaagtggagct 738

                                                                       
Query: 537 gcagatggttctgctagaggaggtgctaggaacccagcccaggtcccctgcaggagcagg 596
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 739 gcagatggttctgctagaggaggtgctaggaacccagcccaggtcccctgcaagagcagg 798

                                                                       
Query: 597 aagtactcttacccactgtgcatctttccatgccccggtatttatgtttgtaaaggtcct 656
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 aagtactcttacccactctgcatctttccatgccccggtatttatgtttgtaaaggtcct 858

                                       
Query: 657 cggggtgcttttcctgaagttt-gatta 683
           |||||||||||||||||||||| |||||
Sbjct: 859 cggggtgcttttcctgaagttttgatta 886


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1085
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1075
Effective search space:   723475
Effective search space used:   723475
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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