BAC Information

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BAC

Clone NameMSMg01-481G11
Chromosome2 (Build37)
Map Location 144,426,016 - 144,586,546
singlet/doubletdoublet
Overlap geneDtd1
Upstream genePcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561
Downstream gene1700010M22Rik, Slc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481G11.T7 (MSMg01no481_g11.b1)MSMg01-481G11.TJ (MSMg01no481_g11.g1)
ACCAG561818AG561819
length734750
length of high quality
(start - end)
394 (325 - 718)394 (321 - 714)
definitionCHROMAT_FILE: MSMg01no481_g11.b1 PHD_FILE: MSMg01no481_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:02 2005CHROMAT_FILE: MSMg01no481_g11.g1 PHD_FILE: MSMg01no481_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,586,155 - 144,586,546)(144,426,016 - 144,426,409)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGA
ATTCCATACTTTTTCTGTGATTCCCGACTCAAAGAAACAGCACAAGGACT
CTCGGAGGTTTTAGTCTAAAAGTTCTCCGAGCTTTTAGATATGCATTAAG
GCAGAAGGACCTCACACAGCACCTGTCTTGAACAGCTAGAAGCTAAGTGT
GCCTTCAGAGTTGACCTTGCTATGATGGCGTTCCAATGGGCTTAATCATG
TGTCAGCATTAATACCACAAATAGCATGCTCTCAACACACTGCAGAGCCT
CTGACAAGCAGCAGACACTGTTCTGGCTGAAAACTGCAGTTCCCTGTGGG
ACTGTCGGATGGATGCTGCTGTTTCTAACCTGTTTGTTGTCCTTTTCCAC
CTCATTTCCTCCACAACTATAGAAACACCTAGGCACTGGTTGCTGGCCAT
CACCTAGGAGTGCCTGGAGACAATGATGTTATGTGTTAGAAAGCTGTACC
ACCACCACCACAACCAACAGCCTTTTGGACTACCAGCTTCCTCCAGATGT
GCTAGTGGCTTTTTATTGCTTTCAAACACCAAGGAGTGAGGAACATCTTC
AATGAGGCCAATGCAGGACCTGAAGCTAGGAATCCTTCAACAGCCTATTC
AAATATAGATGTGGTGGCTGAGATCTGTACTTCTAGTACTTGGGAGGCTG
AAGATGGAAAACTATCCTGGGTTTAGGGCCAGTN
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGTCGCTACAGCCGCCGCCATGAAGGCCGT
GGTGCAGCGCGTCACTCGGGCTAGCGTCACAGGTCAGTCGGGCGGGCCGG
GGAGAGAGCAGCCTCTGACCCCCGCGACCCGCAGTTCCGTGTGAGGGTTC
CCCGCAGCCCCGAGTTACCGGGCAGCCTCTGGGCAGCGCCGTGGCCGAGA
AGATCCGGCACGTGCCTGGCCGCTCATGGGTTCAGGCTCCGTGCTTTCGT
TGCTACATAAACCCTCTTCTCCGTCGTCATCACCATTATAATCATCATCA
TTATCTTTGTGAGTGTGTGTGTGTGTTCCTCACAGACAAGGTGCCAGAAC
CTGTGAGCATCCCCAGGGCCCGTTGTTGAATGCACTGTTGCACAAACAAC
ACATAGGGGAGATTTCCGGAGCGGACTCGCTCGTTTATCCACCGCTCTGT
CTGAGATGTAGCATTTTAACAACCCCCTTTTGCATATCTTTTCTTTTTAA
AATAGAACTTGGCTCATGATAAAATGGACAGACGGAGGAATTGCTAATTG
TTTGAGCTCTGGCAGCTTTGAGCAAATACCTGCTGGCATTCTCACTGGGT
GCAGAACATCCCTTGCTTGCACCTGGATGTCGGTCTCTGAACCTTCAGCC
ACGGGTCAGAACCACAGAATTCAAGATGACATGCTTCTCTTTTCCATTAA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_g11.b1 MSMg01no481_g11.b1 CHROMAT_FILE:
MSMg01no481_g11.b1 PHD_FILE: MSMg01no481_g11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:02 2005
         (394 letters)



>mm_chr2_144586014_144586807
          Length = 794

 Score =  735 bits (380), Expect = 0.0
 Identities = 389/392 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   ctgaaaactgcagttccctgtgggactgtcggatggatgctgctgtttctaacctgtttg 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ctgaaaactgcagttccctgtgggactgtcggatggatgctgctgtttctaacctgtttg 474

                                                                       
Query: 63  ttgtccttttccacctcatttcctccacaactatagaaacacctaggcactggttgctgg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ttgtccttttccacctcatttcctccacaactatagaaacacctaggcactggttgctgg 414

                                                                       
Query: 123 ccatcacctaggagtgcctggagacaatgatgttatgtgttagaaagctgtaccaccacc 182
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 413 ccatcacctaggagtgcctggagacaacgatgttatgtgttagaaagctgtaccaccacc 354

                                                                       
Query: 183 accacaaccaacagccttttggactaccagcttcctccagatgtgctagtggctttttat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 accacaaccaacagccttttggactaccagcttcctccagatgtgctagtggctttttat 294

                                                                       
Query: 243 tgctttcaaacaccaaggagtgaggaacatcttcaatgaggccaatgcaggacctgaagc 302
           ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tgccttcaaacaccaaagagtgaggaacatcttcaatgaggccaatgcaggacctgaagc 234

                                                                       
Query: 303 taggaatccttcaacagcctattcaaatatagatgtggtggctgagatctgtacttctag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 taggaatccttcaacagcctattcaaatatagatgtggtggctgagatctgtacttctag 174

                                           
Query: 363 tacttgggaggctgaagatggaaaactatcct 394
           ||||||||||||||||||||||||||||||||
Sbjct: 173 tacttgggaggctgaagatggaaaactatcct 142


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no481_g11.g1 MSMg01no481_g11.g1 CHROMAT_FILE:
MSMg01no481_g11.g1 PHD_FILE: MSMg01no481_g11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:02 2005
         (394 letters)



>mm_chr2_144425816_144426609
          Length = 794

 Score =  731 bits (378), Expect = 0.0
 Identities = 390/394 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccgtcgtcatcaccattataatcatcatcattatctttgtgagtgtgtgtgtgtgttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccgtcgtcatcaccattataatcatcatcattatctttgtgagtgtgtgtgtgtgttcct 260

                                                                       
Query: 61  cacagacaaggtgccagaacctgtgagcatccccagggcccgttgttgaatgcactgttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacagacaaggtgccagaacctgtgagcatccccagggcccgttgttgaatgcactgttg 320

                                                                       
Query: 121 cacaaacaacacataggggagatttccggagcggactcgctcgtttatccaccgctctgt 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 cacaaacaacacataggggagatttccggagcggaatcgctcgtttatccaccgctctgt 380

                                                                       
Query: 181 ctgagatgtagcattttaacaacccccttttgcatatcttttctttttaaaatagaactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgagatgtagcattttaacaacccccttttgcatatcttttctttttaaaatagaactt 440

                                                                       
Query: 241 ggctcatgataaaatggacagacggaggaattgctaattgtttgagctctggcagctttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggctcatgataaaatggacagacggaggaattgctaattgtttgagctctggcagctttg 500

                                                                       
Query: 301 agcaaatacctgctggcattctcactgggtgcagaacatcccttgcttgcacctggatgt 360
           |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcaaatatctgctggcatcctcactgggtgcagaacatcccttgcttgcacctggatgt 560

                                             
Query: 361 cggtctctgaaccttcagccacgggtcagaacca 394
           ||||||||||||||||||||| ||||||||||||
Sbjct: 561 cggtctctgaaccttcagccatgggtcagaacca 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)