Query= MSMg01no481_h15.b1 MSMg01no481_h15.b1 CHROMAT_FILE:
MSMg01no481_h15.b1 PHD_FILE: MSMg01no481_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:07 2005
(648 letters)
>mm_chr2_21590478_21591525
Length = 1048
Score = 1122 bits (580), Expect = 0.0
Identities = 618/646 (95%), Gaps = 27/646 (4%)
Strand = Plus / Plus
Query: 4 ggaattcccttgattttaaaaatatttcctcaatgtcaacttcttaaatgatgttaagaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccttgattttaaaaatatttcctcaatgtcaacttcttaaatgatgttaagaa 263
Query: 64 ataagttattttgcaacaagcaagaaaagattaattttaaaaattgtgatacagaaagga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ataagttattttgcaacaagcaagaaaagattaattttaaaaattgtgatacagaaagga 323
Query: 124 taaaccagcacaattgtagagaatctgaaattggatcaaacagacagaaatggggacaca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taaaccagcacaattgtagagaatctgaaattggatcaaacagacagaaatggggacaca 383
Query: 184 gtatatgagagaatttgacagatggtttctgttcaaaatgaagaaatggggtctgcagca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtatatgagagaatttgacagatggtttctgttcaaaatgaagaaatggggtctgcagca 443
Query: 244 gggtttcagttagcctggcattttggctcttactgaaatatcatgagaacaaaatatctg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gggtttcagttagcctggcattttggctcttactgaaatatcatgagaacaaaatatctg 503
Query: 304 ttcccaattcacttgctatagtctgtagattaaggcttttgctcatgggtaattcatggc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttcccaattcacttgctatagtctgtagattaaggcttttgctcatgggtaattcatggc 563
Query: 364 aaggaatttctgttctccatgtctctgtctgtctctctgtctgtctgattctctctctct 423
|||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 564 aaggaatttctgttctccatgtctct------ctctct------------ctctctctct 605
Query: 424 ctctctctctctctctctctctctctctctctctctctctctgtctctgtctctgtctat 483
|||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 606 ctctctctctctctctctctctctctctctctctctctctct--------ctctgtctat 657
Query: 484 ttctctctgacagtaatgcattttgatttttcctctgctgagccaatatgtataaggcac 543
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 658 ttctctctgacagtaatgcattttgatttttcctctgctgacccaatatgtataaggcac 717
Query: 544 tttccacttttcagtagtggaaagtgacttatgcatgttattttttttt-aatgtaaagc 602
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 718 tttccacttttcagtagtggaaagtgacttatgcatgttattttttttttaatgtaaagc 777
Query: 603 ttagctaaattagatttcaggattggctatcctatgttaatatatg 648
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 ttagctaaattagatttcaggattggctatcctatgttaatatatg 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 98
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_h15.g1 MSMg01no481_h15.g1 CHROMAT_FILE:
MSMg01no481_h15.g1 PHD_FILE: MSMg01no481_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:07 2005
(591 letters)
>mm_chr2_21777227_21778215
Length = 989
Score = 1100 bits (569), Expect = 0.0
Identities = 585/591 (98%), Gaps = 2/591 (0%)
Strand = Plus / Minus
Query: 1 aggaaaagtgaatgcttaactttaaacataaaaaaaaaaaataaaccgtttaaagaaagt 60
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 789 aggaaaagtgaatgcttaactttaaacat--aaaaaaaaaataaaccgtttaaagaaagt 732
Query: 61 attaagaaagtaggatgtagatgaaggaaaatgcctgaggaaaatgacatgatgagaaag 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 atgaagaaagtaggatgtagatgaaggaaaatgcctgaggaaaatgacatgatgagaaag 672
Query: 121 agggaggaagaaaaagattagataatcagagagcccagttctctgcctagtctcacttag 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 671 agggaggaagaaaaagattagataatcagagagctcagttctctgcctagtctcacttag 612
Query: 181 atgtaggaaacccagaaccaaggatacttacatttatagcacactcctgaaagggaaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 atgtaggaaacccagaaccaaggatacttacatttatagcacactcctgaaagggaaaat 552
Query: 241 gatacagaacaaggccatgagtaagtagatgaaattcttctatgagacggtaaaggcaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gatacagaacaaggccatgagtaagtagatgaaattcttctatgagacggtaaaggcaaa 492
Query: 301 gcacacatataacgaagcagagaaagaccccagagcacctcatccttggtatgtaagatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gcacacatataacgaagcagagaaagaccccagagcacctcatccttggtatgtaagatg 432
Query: 361 cccaattcactgtgagctgtgatgagaagtggggttgctgaggggagtgcagttttaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cccaattcactgtgagctgtgatgagaagtggggttgctgaggggagtgcagttttaaaa 372
Query: 421 cctgggtcaagttcctgagagaacaggctccagagacagcagtagctcagactacaaaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cctgggtcaagttcctgagagaacaggctccagagacagcagtagctcagactacaaaac 312
Query: 481 tacagtgaggttgattatgtaccaaaatgcactcctgaacaagctaatcagcccatgtga 540
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 311 tacagtgaggttgattatgtaccaaaatgcactcctgaacgagctaaccagcccatgtga 252
Query: 541 tgggcagtggatctgaagctccagggtatgttcaacagactcctgatttgt 591
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tgggcagtggatctgaagctccagggtatgttcaacagactcctgatttgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 989
Length adjustment: 10
Effective length of query: 581
Effective length of database: 979
Effective search space: 568799
Effective search space used: 568799
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
