BAC Information

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BAC

Clone NameMSMg01-481H19
Chromosome2 (Build37)
Map Location 18,884,276 - 18,884,828
singlet/doubletsinglet
Overlap genePip5k2a
Upstream gene1700113O17Rik, A930004D18Rik, 2810030E01Rik, Mllt10, LOC641254, Dnajc1, LOC100041388, LOC623325, LOC625815, Commd3, Bmi1, EG667477, LOC100041448, BC061194, LOC667493, LOC100041479
Downstream gene4930426L09Rik, LOC667521, Armc3, Msrb2, LOC100041196, Ptf1a, LOC100041534, 4921504E06Rik, LOC100041244, Otud1, LOC667564
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481H19.T7 (MSMg01no481_h19.b1)MSMg01-481H19.TJ (MSMg01no481_h19.g1)
ACCAG561882AG561883
length761813
length of high quality
(start - end)
556 (45 - 600)127 (78 - 204)
definitionCHROMAT_FILE: MSMg01no481_h19.b1 PHD_FILE: MSMg01no481_h19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:08 2005CHROMAT_FILE: MSMg01no481_h19.g1 PHD_FILE: MSMg01no481_h19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTGTTTAGTCCGGTTTAAAGGAAAGGGCATGTTGTCTGCTTTTGA
GACACTGTCATATTTTATATGGTCACCAACTCCCGCTCCTGTTTTTGCCC
ATTACACGTGCCATTAGCAAAACCATGAAATGCAGACTTATCAGCAAGGG
CTTTTTATTTGGCTTTATATAAAATATTAGGAATAAAAGGGTCAGGACAG
GGAGGCTTCTTACTAAGTTCAGCCAAGTGTGTGGGGCTGTGAGAGCAGAC
CTCAGGCAGCGGCAGAACCACTGGACAGCAGGACAGTTGGACTGGAAGGT
AAAATCCACCCTTCAGTAGGGCCACGGAGGACAGGAAGCCCTTAGCTGAG
GTCAGGTTGTAACGTACAGGTTGTTAGGGTTGTATGTTGGGATATTCTCT
TCCAGCTGGTGGTTTGGTTTTGGGAGATGGAACCCCAGGAGATGGGCCTA
GTTGGAGGAAGTGGGTCACCAGGGGTAGGTTTATAAAACCACAGGGCTTC
TGGCCCAATCTCTGACTATCACATCCCTTCCATGGAACAAGGAGTCCTAG
CCTCAAACCACACCCATCCTCCCCTGCCATGGGGACAGTGCACCAGGAGT
CCTTCTTGCCCTAAATTCCTAAAATGCTGCTGATTTTTGGTTTTGTTTAT
GAATGNGCAAGNGGNGNGTGTGTGNNNNNTNNNNNNNNNNANNNNNNNNN
NNNTTTTTANA
NCCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGACATCAGTCCAGGAGCACAT
TTACCACCTATCTGTGAGTGTGAGTGTGCGTGCGTGTGTGCATGCCTGAG
TGAGTTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGTGT
ATGNNTTATAAANNTCTTTTTCTTTTTTCCCTTTCTCCTTCCTCCCTCTT
CCTACCTCTCCCTACTCTTCCCTCTTTTTTTCCCTTACTGTTTCCTCCCC
CCTTCTTTTTCCCCCTTCTCCTTTTCTTTTTTCTTAATCCCCTTTTTCTT
TTTTTTTTTTCCTTTCTTTTTTCTTTCTTCCCCCTCCTTTTCTCCTCCTT
TTTTCTTTTCTTCTTCATTCTCCCCCCCCCCTCCCTCATTTTCTCCTTTT
ATCTCTCTTCTCTTCTCTCCCTTCCCCCTTCTTCTCTCTTTCCTTCCTTC
CCCCTTTTTCTTCTTTCTCTTTCTTTTTTTCCCCTTCTTTTCTACCTTCT
CCTTTTCTTTCTTTTCCTCCTTTTTTACTTTCTTTTCCCTACCTATCTCC
TTTCCTTTCTTTCCATCCTCTCTCCCTTTTTTTTTTTCCTCTGTTTTCTC
CTCGCTTTCTTTTCTCCTTTTTTTTCTCCTTTTTTCCTTTCTCCCCCTCT
TTTTTTTCCCCCCCTTCTTTTTTTCCCTCTCCCTCTTTTCTCCTCTCTCC
TTTTTCTTCCTCTCTTCTTTTCTCCTTTTTTTCCATCTTTTTTACTCTCC
CCTCTTCTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_h19.b1 MSMg01no481_h19.b1 CHROMAT_FILE:
MSMg01no481_h19.b1 PHD_FILE: MSMg01no481_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:08 2005
         (556 letters)



>mm_chr2_18884249_18885204
          Length = 956

 Score =  946 bits (489), Expect = 0.0
 Identities = 537/553 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactgtttagtccggtttaaaggaaagggcatgttgtctgcttttgagacactg 63
           |||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ggaatttactgtttagtagggtttaaaggaaagggcatgttgtctgcttttgagacactg 521

                                                                       
Query: 64  tcatattttatatggtcaccaactcccgctcctgtttttgcccattacacgtgccattag 123
           |||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||
Sbjct: 520 tcatattttatatggtcaccaactcctgctcctgtttttgccctttacacatgccattag 461

                                                                       
Query: 124 caaaaccatgaaatgcagacttatcagcaagggctttttatttggctttatataaaatat 183
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 460 caaaaccatgaaatgcagacttatcagcaaggactttttatttggctttatataaaatat 401

                                                                       
Query: 184 taggaataaaagggtcaggacagggaggcttcttactaagttcagccaagtgtgtggggc 243
           ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 400 taggaataaaatggtcaggacagggaggcttcttagtaagttcagccaagtgtgtggggc 341

                                                                       
Query: 244 tgtgagagcagacctcaggcagcggcagaaccactggacagcaggacagttggactggaa 303
           ||||||||| | |||||||||||||||||||||||| ||||||||||||  |||||||||
Sbjct: 340 tgtgagagctggcctcaggcagcggcagaaccactgaacagcaggacagcaggactggaa 281

                                                                       
Query: 304 ggtaaaatccacccttcagtagggccacggaggacaggaagcccttagctgaggtcaggt 363
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 280 ggtaaaatccacccttcagtaggaccacggaggacaggaagcccttagctgaggtcaggt 221

                                                                       
Query: 364 tgtaacgtacaggttgttagggttgtatgttgggatattctcttccagctggtggtttgg 423
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 220 tgtaacgtacaggttgttagggttgtatgttgggatgttctcttccagctggtggtttgg 161

                                                                       
Query: 424 ttttgggagatggaaccccaggagatgggcctagttggaggaagtgggtcaccaggggta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 ttttgggagatggaaccccaggagatgggcctagttggaggaagtgggtcaccaggggta 101

                                                                       
Query: 484 ggtttataaaaccacagggcttctggcccaatctctgactatcacatcccttccatggaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 ggtttataaaaccacagggcttctggcccaatctctgactatcacatcccttccatggaa 41

                        
Query: 544 caaggagtcctag 556
           |||||||||||||
Sbjct: 40  caaggagtcctag 28


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)