BAC Information

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BAC

Clone NameMSMg01-481I11
Chromosome2 (Build37)
Map Location 154,373,127 - 154,373,707
singlet/doubletsinglet
Overlap geneApba2bp
Upstream geneCommd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2
Downstream gene1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481I11.T7 (MSMg01no481_i11.b1)MSMg01-481I11.TJ (MSMg01no481_i11.g1)
ACCAG561913AG561914
length750758
length of high quality
(start - end)
581 (64 - 644)511 (70 - 580)
definitionCHROMAT_FILE: MSMg01no481_i11.b1 PHD_FILE: MSMg01no481_i11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:12 2005CHROMAT_FILE: MSMg01no481_i11.g1 PHD_FILE: MSMg01no481_i11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATAAATCCGCGGAATTCAG
GAACAATTACACCCACACACCCGCAGCCCAGCAGCACCCTCACATACCGC
TGGCCATGGGCCTGCGCCTCCAGGGTGTCTGATGCTCCCTCCAGGGAGGT
CTGCAGGGCTTGTAGCTGATTGACAGTCTCCCGCAGCAGAAATCGTGTGA
CAAACTGGTCCACCTTGGAGGCCTGTTCATACTCCTATGTGCAGGGCAAG
ATAACAGGGAGCTTACCTTGCTCATGAGAGCAGCAATGGAAGTGGACAGA
GCATGCAGGCCAGTTTTTTCTAGTTACCACTCACTTCCCATCTTTGTCTC
CAGACAGGGTCTTAATTTCTAGCCCAGACTTGCCTTGACTTGGGATCCTC
CTGTATATGCCTCCCCAGTGCTAGAATGAATTAAAGATGGGAACCACTCT
GCCCAGCTTCTAAGGCCCCTTTTCCCAGTGCAGATGGACTTTGTTCATCC
TTGCATATGAGGCTGGTTCACAGGATCATACCCTCCTGGGACACTGGGTT
CTCCTGGATCTCAATTCCTCTTCAAAGTTAAGGCTCAGCCGGACGTGGTG
GCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCT
GATTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACTGCCAGGGC
TACACAGAGAAACCCTGTCTCGAAAAGACCATTTTCTTATATATTATTTC

TGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTGATGCACAAGATCTGTGGATCTAGGATGT
GAGCAACTGTGTGGGCTGAATCAGCACACAGCTCCATCGCTACCACCATA
GATTGCTTTGTTCATCTTTTAAGTGGCTCTCTGGGCTCTGCCCAGTGACA
GACACTGAGGTCACAGGTCAAGCAGAGCCCCCAGATTTCTGCTCTCCAGG
CTTACTGTCTCACAGGGAGACCACTGCAATACACATTGGTGAGGGTCATG
AGGTGGGACAGGGGATAGATGATGGGGTCTGAGCCTGGAGAAGACAGAGG
GAGGAGCTAAAAGGTCACCAGGTGAATGTGGCACCTCGGAGGCAGAGGCA
GAGGCAGAGGCACACGCAGAGGCAGAGAGGCAGAGGCAGAGGCAGAGGCA
GAGAGGCAGAGGCAGAGAGGCAGAGGCAGAGGCAGAGGCAGAGAGGCAGA
GGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGG
CAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCA
GAGGCAGAGGCAGAGGCAGATGGATCTTTTTAAATTCAAGGCTAGCCTGG
TCTACAGAGCTAATTCCAGGACAGACAGACAAGGTTATACTGAGAAACCT
TCTCTCTCAAAAAAAAAAAAAAAAAAAAAAAAGATATGAGATAGGGGAGA
TATAGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_i11.b1 MSMg01no481_i11.b1 CHROMAT_FILE:
MSMg01no481_i11.b1 PHD_FILE: MSMg01no481_i11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:12 2005
         (581 letters)



>mm_chr2_154372927_154373907
          Length = 981

 Score = 1065 bits (551), Expect = 0.0
 Identities = 573/587 (97%), Gaps = 12/587 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacacacccgcagcccagcagcaccctcacataccgctggccatgggcctgcgcctccag 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacatacccgcagcccagcagcaccctcacataccgctggccatgggcctgcgcctccag 260

                                                                       
Query: 61  ggtgtctgatgctccctccagggaggtctgcagggcttgtagctgattgacagtctcccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgtctgatgctccctccagggaggtctgcagggcttgtagctgattgacagtctcccg 320

                                                                       
Query: 121 cagcagaaatcgtgtgacaaactggtccaccttggaggcctgttcatactcctatgtgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagcagaaatcgtgtgacaaactggtccaccttggaggcctgttcatactcctatgtgca 380

                                                                       
Query: 181 gggcaagataacagggagcttaccttgctcatgagagcagcaatggaagtggacagagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggcaagataacagggagcttaccttgctcatgagagcagcaatggaagtggacagagca 440

                                                                       
Query: 241 tgcaggccagttttttc------tagttaccactcacttcccatctttgtctccagacag 294
           ||||||||||      |      |||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcaggccag------cacaagctagttaccactcacttcccatctttgtctccagacag 494

                                                                       
Query: 295 ggtcttaatttctagcccagacttgccttgacttgggatcctcctgtatatgcctcccca 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ggtcttaatttctagcccagacttgccttgacttgggatcctcctgtatatgcctcccca 554

                                                                       
Query: 355 gtgctagaatgaattaaagatgggaaccactctgcccagcttctaaggccccttttccca 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gtgctagaatgaattaaagatgggaaccactctgcccagcttctaaggccccttttccca 614

                                                                       
Query: 415 gtgcagatggactttgttcatccttgcatatgaggctggttcacaggatcataccctcct 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gtgcagatggactttgttcatccttgcatatgaggctggttcacaggatcataccctcct 674

                                                                       
Query: 475 gggacactgggttctcctggatctcaattcctcttcaaagttaaggctcagccggacgtg 534
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 675 gggacactgggttctcctggatctcaattcctcttcaaagttaaggctgagccggacgtg 734

                                                          
Query: 535 gtggcgcacgcctttaatcccagcactcgggaggcagaggcaggtgg 581
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gtggcgcacgcctttaatcccagcactcgggaggcagaggcaggtgg 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)