MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-481J20
Chromosome	2 (Build37)
Map Location	59,167,025 - 59,167,668
singlet/doublet	singlet
Overlap gene	Pkp4
Upstream gene	Acvr1c, LOC667062, Acvr1, LOC674940, Upp2, BC062650
Downstream gene	LOC625354, 2310032F03Rik, LOC100038999, LOC100039016, Tanc1, Wdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75
Link	Open Mouse BAC browser

Click to get alignment info.

name	Acvr1c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:269275 MGI:2661081
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667062 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667062
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 254 ESTs, 4 Proteins pseudo : _no_value

name	Acvr1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11477 MGI:87911
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC674940 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:674940
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	Upp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76654 MGI:1923904
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC062650 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:227933 MGI:3039583
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs, 3 Proteins

name	Pkp4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:227937 MGI:109281
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC625354 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:625354
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins pseudo : _no_value

name	2310032F03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76747 MGI:1923997
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100038999 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038999
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 97 ESTs, 4 Proteins

name	LOC100039016 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039016
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Tanc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66860 MGI:1914110
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wdsub1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72137 MGI:1919387
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Baz2b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:407823 MGI:2442782
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667103 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667103
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 6 Proteins

name	LOC667106 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667106
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs

name	Ldha-ps (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16829 MGI:96760
definition	gene_synonym : Ldh-1ps; Ldh1-ps note : lactate dehydrogenase A, pseudogene pseudo : _no_value

name	LOC100039092 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039092
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	March7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57438 MGI:1931053
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cd302 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66205 MGI:1913455
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC625861 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:625861
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 297 ESTs, 9 Proteins pseudo : _no_value

name	Ly75 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17076 MGI:106662
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Acvr1c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802377 GeneID:269275 MGI:2661081
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : activin A receptor, type IC transcript_id : NM_001033369.2

name	Acvr1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254648 GeneID:11477 MGI:87911
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : activin A receptor, type 1 transcript_id : NM_007394.2

name	Upp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892991 GeneID:76654 MGI:1923904
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : uridine phosphorylase 2 transcript_id : NM_029692.2

name	BC062650 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149249292 GeneID:227933 MGI:3039583
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs, 3 Proteins product : cDNA sequence BC062650, transcript variant 3 transcript_id : XM_906580.3

name	Pkp4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:51491820 GeneID:227937 MGI:109281
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : plakophilin 4 transcript_id : NM_026361.1

name	2310032F03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142370442 GeneID:76747 MGI:1923997
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2310032F03 gene transcript_id : NM_029723.2

name	LOC100038999 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149249787 GeneID:100038999
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 97 ESTs, 4 Proteins product : similar to mitochondrial ribosomal protein S18B transcript_id : XM_001472065.1

name	LOC100039016 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149249789 GeneID:100039016
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100039016 transcript_id : XM_001472095.1

name	Tanc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:57164406 GeneID:66860 MGI:1914110
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 transcript_id : NM_198294.2

name	Wdsub1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58037280 GeneID:72137 MGI:1919387
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WD repeat, SAM and U-box domain containing 1 transcript_id : NM_028118.1

name	Baz2b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131072 GeneID:407823 MGI:2442782
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : bromodomain adjacent to zinc finger domain, 2B transcript_id : NM_001001182.3

name	LOC667103 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94366974 GeneID:667103
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 6 Proteins product : similar to brain protein 44-like transcript_id : XM_988334.1

name	LOC667106 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149249791 GeneID:667106
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs product : hypothetical LOC667106 transcript_id : XM_988366.2

name	LOC100039092 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149249793 GeneID:100039092
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : similar to Proline-rich actin-associated protein involved in cytoskeletal organization and cytokinesis; related to mammalian Wiskott-Aldrich syndrome protein (WASP)-interacting protein (WIP) transcript_id : XM_001472247.1

name	March7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130502 GeneID:57438 MGI:1931053
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : membrane-associated ring finger (C3HC4) 7 transcript_id : NM_020575.2

name	Cd302 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369264 GeneID:66205 MGI:1913455
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD302 antigen transcript_id : NM_025422.2

name	Ly75 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803207 GeneID:17076 MGI:106662
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lymphocyte antigen 75 transcript_id : NM_013825.2

name	Acvr1c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701866 CCDS:CCDS16049.1 GeneID:269275 MGI:2661081
definition	GO_component : GO:0048179 - activin receptor complex [Evidence ISS]; GO:0009986 - cell surface [Evidence ISS]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0048185 - activin binding [Evidence ISS]; GO:0016361 - activin receptor activity, type I [Evidence ISS]; GO:0005524 - ATP binding [Evidence IEA] [Evidence ISS]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0005024 - transforming growth factor beta receptor activity [Evidence IEA]; GO:0004675 - transmembrane receptor protein serine/threonine kinase activity [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0030154 - cell differentiation [Evidence ISS]; GO:0007368 - determination of left/right symmetry [Evidence IMP]; GO:0001701 - embryonic development (sensu Mammalia) [Evidence IMP]; GO:0043065 - positive regulation of apoptosis [Evidence ISS]; GO:0006468 - protein amino acid phosphorylation [Evidence ISS] [Evidence IEA]; GO:0042981 - regulation of apoptosis [Evidence ISS]; GO:0001834 - trophectodermal cell proliferation [Evidence ISS] codon_start : 1 note : activin receptor-like kinase 7 product : activin A receptor, type IC protein_id : NP_001028541.1

name	Acvr1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254649 CCDS:CCDS16050.1 GeneID:11477 MGI:87911
definition	GO_component : GO:0045177 - apical part of cell [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0048185 - activin binding [Evidence IPI]; GO:0016361 - activin receptor activity, type I [Evidence IDA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0019838 - growth factor binding [Evidence IDA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004702 - receptor signaling protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0050431 - transforming growth factor beta binding [Evidence IDA]; GO:0005024 - transforming growth factor beta receptor activity [Evidence IEA]; GO:0005025 - transforming growth factor beta receptor activity, type I [Evidence IDA]; GO:0004675 - transmembrane receptor protein serine/threonine kinase activity [Evidence IEA] GO_process : GO:0007368 - determination of left/right symmetry [Evidence IMP]; GO:0009790 - embryonic development [Evidence IMP]; GO:0001701 - embryonic development (sensu Mammalia) [Evidence IMP]; GO:0007369 - gastrulation [Evidence IMP]; GO:0007281 - germ cell development [Evidence IMP]; GO:0007507 - heart development [Evidence IMP]; GO:0001707 - mesoderm formation [Evidence IMP]; GO:0001755 - neural crest cell migration [Evidence IMP]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007179 - transforming growth factor beta receptor signaling pathway [Evidence TAS] [Evidence IDA]; GO:0007178 - transmembrane receptor protein serine/threonine kinase signaling pathway [Evidence IEA]; GO:0001655 - urogenital system development [Evidence ISS] codon_start : 1 note : activin A receptor type 1 product : activin A receptor, type 1 protein_id : NP_031420.2

name	Upp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27597065 CCDS:CCDS16051.1 GeneID:76654 MGI:1923904
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005829 - cytosol [Evidence ISS]; GO:0045098 - type III intermediate filament [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO:0004850 - uridine phosphorylase activity [Evidence IEA] [Evidence ISS] GO_process : GO:0009116 - nucleoside metabolism [Evidence ISS]; GO:0009166 - nucleotide catabolism [Evidence IEA]; GO:0046108 - uridine metabolism [Evidence ISS] codon_start : 1 product : liver-specific uridine phosphorylase protein_id : NP_083968.1

name	BC062650 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149249293 GeneID:227933 MGI:3039583
definition	codon_start : 1 product : hypothetical protein LOC227933 isoform 3 protein_id : XP_911673.3

name	Pkp4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51491821 CCDS:CCDS16052.1 GeneID:227937 MGI:109281
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA] codon_start : 1 product : plakophilin 4 protein_id : NP_080637.1

name	2310032F03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62988342 CCDS:CCDS16053.1 GeneID:76747 MGI:1923997
definition	codon_start : 1 note : novel protein similar to death associated protein 1b dap1b (Danio rerio) product : hypothetical protein LOC76747 protein_id : NP_083999.1

name	LOC100038999 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149249788 GeneID:100038999
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472115.1

name	LOC100039016 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149249790 GeneID:100039016
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472145.1

name	Tanc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57164407 CCDS:CCDS16054.1 GeneID:66860 MGI:1914110
definition	GO_function : GO:0005488 - binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA] codon_start : 1 product : TPR domain, ankyrin-repeat and coiled-coil-containing protein_id : NP_938036.2

name	Wdsub1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037281 CCDS:CCDS16055.1 GeneID:72137 MGI:1919387
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0000151 - ubiquitin ligase complex [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0016567 - protein ubiquitination [Evidence IEA] codon_start : 1 note : novel protein containing WD40, SAM and U-box domains product : WD repeat, SAM and U-box domain containing 1 protein_id : NP_082394.1

name	Baz2b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62177117 CCDS:CCDS16056.1 GeneID:407823 MGI:2442782
definition	codon_start : 1 note : novel protein containing MBD, Bromodomain, DDT and PHD domains product : bromodomain adjacent to zinc finger domain, 2B protein_id : NP_001001182.2

name	LOC667103 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94366975 GeneID:667103
definition	codon_start : 1 product : hypothetical protein protein_id : XP_993428.1

name	LOC667106 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149249792 GeneID:667106
definition	codon_start : 1 product : hypothetical protein protein_id : XP_993460.2

name	LOC100039092 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149249794 GeneID:100039092
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472297.1

name	March7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10181210 CCDS:CCDS16057.1 GeneID:57438 MGI:1931053
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : axotrophin product : membrane-associated ring finger (C3HC4) 7 protein_id : NP_065600.1

name	Cd302 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27228976 CCDS:CCDS16058.1 GeneID:66205 MGI:1913455
definition	codon_start : 1 product : CD302 antigen protein_id : NP_079698.2

name	Ly75 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305245 GeneID:17076 MGI:106662
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006952 - defense response [Evidence IEA]; GO:0006897 - endocytosis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : lymphocyte antigen 75 protein_id : NP_038853.1

name	LOC674940 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:674940
definition	number : 1 pseudo : _no_value

name	LOC674940 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:674940
definition	number : 2 pseudo : _no_value

name	LOC674940 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:674940
definition	number : 3 pseudo : _no_value

name	LOC667062 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149249327 GeneID:667062
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 254 ESTs, 4 Proteins product : similar to ribosomal protein L29 pseudo : _no_value transcript_id : XR_034449.1

name	LOC625354 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149249786 GeneID:625354
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins product : similar to lactate dehydrogenase 1, A chain pseudo : _no_value transcript_id : XR_030527.1

name	LOC625861 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149249797 GeneID:625861
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 297 ESTs, 9 Proteins product : similar to ribosomal protein L10a pseudo : _no_value transcript_id : XR_030626.1

clone name	MSMg01-404N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419E13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-182J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-525L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-071I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-074G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439O11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-142D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-293N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356C20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-128M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-534C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-202D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-122H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-295H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-088J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-103M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498K24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390I11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-063K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-505B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-492H09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-522A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-102B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-209O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-369L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-100F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072O04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063F04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-446I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-274O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-271C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-331I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-084B07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-109A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-348P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-066B11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499G18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-306I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-138B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-431O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482C02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017B03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-215G05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-283J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005O24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156H09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-349D08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114J08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008J22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189P15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166E21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-053A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-343O16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-243E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345L16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146O06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-332B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345G10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240H16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255C06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-073A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211B14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121K01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-065H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068C11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-296G07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-014E05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-144N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308A20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-344H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257D12
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-481J20.T7 (MSMg01no481_j20.b1)	MSMg01-481J20.TJ (MSMg01no481_j20.g1)
ACC	AG561979	AG561980
length	1,647	757
length of high quality (start - end)	---	644 (71 - 714)
definition	CHROMAT_FILE: MSMg01no481_j20.b1 PHD_FILE: MSMg01no481_j20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:18 2005	CHROMAT_FILE: MSMg01no481_j20.g1 PHD_FILE: MSMg01no481_j20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:18 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TTGATTATCGAGAGATGTATTCGCACAAAANGATACTGCTACTCGAGATT CTCCACAGTGCGCGCGNCTGCCGTGCGGCGTCGTTTGGGTCGTTCTCTCT CTCACGCCTCAATCCTTCTCCTATATATACACACTACGANCAACAATGAN CTAGAGATGACCAGGAATCGTAGAGGAGCACTCTACGTTAGTGTGTGTAA CCTATGACTGTGTGACGGTAGTGATCGACCGAACGCGGCGAGCGCGCCGT GGCGCGATATCATATTGAGGAGTGATGTGTACGCGATACTGCGTCTCCGC AGTGATATCGCAAATACGGCTTAGTCCGCCCTGCNTACCGCNCTGTTTGT GTTATTNGTTCGCCCCGCTGCTGTCGCGCTGTCTGTACGCGGTCGTGATC ATCATTCGCTGGAGAGTATCGNGTATTGCAGAGTAAGNCAGCNTGCTGAT CAATATATGATGCAGCTATGTCGGATAGTGCATTACGCATGATCGACTTC TATGCTCCGACGCCGATCGCATGTCATGCGCCTCCTGTGTGTATACTAGA GAGTTCCGTTGNGTTCGTCGCGCTGTATCGCCCGCTATTCGTATGTTCTC TTCATATAGTTGCAGATTGTAGTTTGTGTNTGCTTGGNCTCGCACGCCGT TGCTGAGGTGTACCTCGCCTTATGTGCACTGTGTCTCTGCTGCTCTTGTA TTGTACTGCGCGGCTGTGTCATGAGTGACTACTATTGGACTCACGTCGCA TAGCTCTNCNGCTATGTCGGCGTAATGCGTTGTCGTCAGCGTGACATGTA TGAGTGTATTCAGATAGCTATATCAGACTAGTAGATAACACACAACGCAC ATATATTCTATCCTGTTGACATCGCTCGCGAATCTCCAGCGGTCGCAGCN AGTGTTGAGCTGATACTGATGGTGCACGCCTCAGCTGATGCACACGATTA TGGCGACTCTCAGCATAATAGTATCGGCNACTACTATAGTAGTGATTGCC TCACCCTTCAGACGATCCACATACATCTCAGCATGTCACGTATCGTTAGA TATATATACACTTATGCGTCTATTGACACGGGCTAGTATATATCGCTAGT GTGTGNGTAATGCGCTGTCGTACTTGTNCTACATCTCNCGACTCATCGCC AGCCACNCGATGCAGTGACATCTGCCCGCGTATAGCAGAAGNTTGACATG ATTTATAGGTGCGTAAGCTGATCCAATGCATTATGATCTGCTGCGTCCTC GNCGTGTCGCGTTGTACTCTCGATGTATGTCGANATATGATTGTACATCG CTGCAGTCCNCNGATGGAATACTAGTGAGTATGCATCGTCGATATGACCA CACGGTACCTGCTTTNGATACATGAATAGGATGCATGTAGAGCTGGTAGA GCGTGGACTCTCGTCATCACGAACGACTGCAGTCGCGTCGTCATTCTTGC GATCTAGTGCTCTATCTCGTGTACTATCGTCTAGTACTCGTTTCGACGCG TCATGTCTATGTCGCCAATATTTNAGGAGCCATCGTTTATGTGTNTATCT ATGTCGCACGCATCGAGCTCGATCACGCACCGCACTCCATGTGACGNATT TGTATACGNTATCGACCATAGCTGTCTCTCTTATGANGTANTAGCNG	TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXTAGAGATCCTGAGTACTTCAAATTAAAGAA TTTCCTAGATTTTTAAAAATATTTGCACTTTACTAAACTATCTCAGATTT GGGGCTTTTATAATACTCAGCCTATATAGTGGTTGAGAGGAGATGGTATA AGTTTAAAAAGTCGAAGGTTTTATGGTTTGTAGATTTAAGACTGGCAGGC AGTAGCAGGTGGCCATACTGTGGCAAAGTATAGTCACCATAGCATCTTGT TAATACTGTTTTCCCAAAAGTCAGAGCCACAGAGCAAAGGGAAGACCTTC AGGGACAGCCGCAGAAGAGAGGCAGACGAGGCTGTCGCAGGTTCTGAGTA CCTCAGCTGAAAGCTAGCTGGAGAATAATAGTGAGGACATTCTCAGAGCA GGCTGTGGTCCTGGATTAGAGACCACACACCCACCCACCTTCCTAGCCGG GTATCAGCACCGTGTGGGTATACACAATGCTGTACACCCCATGGTGTTTG TACTATATGGTTTCCAGTGTTTTTCAGCAATGCTTTCAGGATGGGTGTGC GTGACAGCGCCATGTTCTCCTAAGTCCATGGATGCAGTGTTGTCAGAATG AGAGCAGGGTCTAGGCTAAGCAGCAGAAGCATGGCCACTATCTTAGGGTC CATATTGCTGCGAAGAGACACCATGACAGCAAATTTTATAACGGAAAGCT TTTATTG
quality values	Open. Hide. 8 8 8 8 7 7 7 8 8 6 6 6 8 11 10 10 10 9 9 8 8 8 6 6 8 7 9 9 9 3 0 3 8 8 8 8 8 6 6 6 6 6 8 8 6 6 8 6 6 6 6 6 7 6 6 6 6 10 10 8 8 8 8 8 8 3 0 3 6 6 6 6 6 6 6 7 7 7 7 10 8 9 8 8 8 8 6 6 6 6 8 6 8 8 8 9 10 8 9 9 8 10 6 6 6 6 6 8 8 8 8 10 9 9 9 9 12 10 8 8 8 8 8 9 9 11 15 15 15 11 10 13 11 11 11 15 11 9 3 0 3 8 8 8 8 8 8 8 3 0 3 8 8 8 8 6 6 10 10 9 6 7 6 8 8 9 9 9 9 8 6 6 6 6 6 6 6 8 8 6 6 6 6 6 6 6 6 6 6 6 6 6 10 8 9 8 10 8 8 6 8 8 8 11 11 16 11 13 13 8 10 8 6 6 6 8 8 9 10 10 10 10 8 8 8 6 6 6 6 8 8 8 8 6 6 6 6 6 6 8 10 8 10 12 12 12 12 10 7 7 7 7 8 8 6 6 6 6 8 8 8 8 8 6 7 12 6 6 8 8 8 8 8 8 9 9 8 8 8 8 8 8 6 6 8 6 6 6 8 6 9 10 10 10 10 11 10 10 7 6 6 6 6 6 6 6 8 10 6 7 6 7 8 8 8 8 6 6 6 8 8 7 7 7 8 12 12 7 7 6 6 8 6 3 0 3 8 8 7 7 3 0 3 6 6 6 10 7 8 8 8 8 8 8 8 3 0 3 6 6 6 6 7 11 15 8 8 6 6 6 8 6 6 8 9 11 11 13 10 10 10 10 8 8 7 6 8 6 6 6 6 6 6 8 8 9 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 6 6 8 8 10 8 8 3 0 3 6 6 8 8 6 6 7 7 6 6 6 6 9 3 0 3 6 6 3 0 3 8 10 8 8 6 6 8 8 6 6 8 8 13 15 8 8 8 8 8 8 10 10 9 11 10 11 11 10 8 6 6 7 6 8 8 6 6 6 8 6 6 6 8 6 8 8 8 10 8 8 9 9 6 6 6 6 6 8 8 9 9 9 9 10 10 10 8 8 8 8 10 8 8 8 8 10 11 11 8 8 8 8 10 17 23 15 8 8 8 8 8 8 11 12 16 12 12 14 14 16 12 10 6 6 6 6 6 6 6 6 6 6 6 6 6 6 3 0 3 6 7 8 12 12 10 8 8 8 8 10 8 9 9 11 18 10 7 6 6 6 6 6 8 7 6 8 6 6 6 6 6 7 6 6 9 8 8 6 6 6 6 8 8 6 6 6 11 11 6 6 6 6 6 6 6 6 6 7 8 8 8 8 8 8 3 0 3 8 8 8 8 8 3 0 3 9 9 9 7 7 7 7 8 8 8 8 8 8 8 8 8 6 6 8 8 8 6 8 8 7 6 6 6 6 8 8 8 9 9 10 15 17 10 12 10 11 11 11 11 10 11 10 10 10 8 10 10 10 8 8 10 10 12 10 8 8 8 8 6 6 6 6 6 10 10 8 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 8 10 11 7 7 9 8 8 8 8 8 8 8 8 6 6 6 6 6 6 8 8 8 8 11 10 8 8 8 8 3 0 3 0 3 6 6 6 6 6 6 6 6 6 6 10 16 10 8 8 8 10 10 8 8 10 8 8 8 8 8 8 8 8 7 6 6 6 6 10 6 6 6 6 8 8 9 10 8 6 6 6 8 8 8 8 8 10 6 6 6 8 8 10 8 8 6 6 6 8 8 8 10 8 8 6 10 8 6 6 6 6 6 6 8 8 8 11 12 11 8 10 8 8 8 10 18 11 11 9 9 8 8 8 8 8 8 8 9 10 10 10 8 8 6 7 6 6 8 14 9 9 9 8 8 6 6 8 8 8 6 6 6 6 7 6 8 6 6 6 6 6 3 0 3 8 8 8 8 8 8 8 8 8 8 8 8 9 9 9 9 6 6 6 6 6 6 6 6 6 8 8 8 8 10 8 6 6 6 6 6 6 8 10 8 8 8 8 8 9 6 6 6 6 8 8 13 15 9 9 8 6 6 6 6 6 8 6 6 6 6 8 8 7 7 8 7 8 6 6 6 3 0 3 6 6 6 6 8 8 8 8 6 6 6 6 6 9 9 10 12 10 9 10 10 10 8 6 6 6 6 6 6 6 8 8 10 8 8 10 10 9 12 9 9 9 6 8 6 6 6 6 6 7 6 6 6 8 9 9 9 9 10 8 9 14 9 10 8 6 6 6 6 8 8 6 6 6 6 8 7 9 12 8 8 8 8 8 6 8 8 8 8 10 10 9 8 10 8 6 6 6 6 7 6 6 11 11 12 12 16 12 14 10 9 9 9 11 11 13 11 11 10 10 9 6 6 6 3 0 3 6 8 8 16 15 10 8 8 8 8 8 8 8 8 6 6 6 6 7 3 0 3 9 11 14 14 13 11 11 3 0 3 6 6 7 10 7 7 8 8 8 8 8 8 8 10 10 8 3 0 3 8 8 6 6 6 6 6 6 6 6 6 6 6 6 8 8 8 8 8 8 8 8 8 8 10 13 10 8 8 7 6 6 3 0 3 6 6 6 7 10 8 8 6 6 8 6 6 6 6 6 6 6 6 6 6 6 8 9 9 9 9 9 8 6 6 6 6 6 8 8 8 8 8 8 8 8 9 9 9 9 9 9 9 9 10 10 6 6 6 6 6 6 3 0 3 9 9 10 8 6 6 6 6 6 8 8 8 6 6 8 8 8 8 8 8 6 6 6 10 6 6 6 6 6 3 0 3 11 10 6 8 6 6 8 7 7 7 7 7 7 6 6 6 6 6 8 6 6 6 6 3 0 3 0 3 6 8 8 9 6 8 8 9 11 11 18 11 10 6 6 6 6 6 6 10 9 8 8 8 7 8 8 10 9 10 9 6 6 6 6 8 8 8 8 6 6 6 6 6 6 7 10 6 6 6 6 3 0 3 8 7 6 6 6 6 6 6 6 6 6 6 8 8 8 8 8 8 8 8 8 8 8 13 6 6 6 6 8 8 6 6 6 6 8 8 10 10 10 10 10 10 8 10 6 6 6 8 6 6 6 6 9 8 8 6 6 6 6 8 8 10 9 9 6 6 6 6 6 6 9 9 9 9 8 6 12 7 7 7 6 6 6 6 6 6 8 6 9 9 8 8 8 6 12 7 6 8 8 10 10 10 10 8 8 6 6 7 6 8 6 9 9 9 9 9 8 6 6 6 6 6 9 9 9 10 10 10 12 12 8 8 8 8 8 10 10 8 8 8 8 8 10 8 8 10 8 8 6 6 6 8 6 6 6 3 0 3 6 6 6 6 6 10 9 10 8 8 8 8 8 8 10 9 8 8 3 0 3 8 6 6 6 8 8 8 9 9 10 11 11 9 9 7 6 8 8 8 8 9 6 8 6 6 6 8 6 6 6 6 6 6 8 6 8 8 10 16 13 16 12 15 10 10 8 8 8 6 3 0 3 6 6 6 8 8 10 9 9 9 3 0 3 6 8 6 6 8 8 8 6 6 6 6 6 6 6 8 6 6 6 8 10 10 7 6 6 6 3 0 3 10 3 0 3 7 7 3 0 3	Open. 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Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no481_j20.g1 MSMg01no481_j20.g1 CHROMAT_FILE:
MSMg01no481_j20.g1 PHD_FILE: MSMg01no481_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:18 2005
         (644 letters)



>mm_chr2_59166825_59167868
          Length = 1044

 Score = 1230 bits (636), Expect = 0.0
 Identities = 642/644 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagagatcctgagtacttcaaattaaagaatttcctagatttttaaaaatatttgcactt 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 tagagatcctgagtacttcaaattaaagaatttactagatttttaaaaatatttgcactt 260

                                                                       
Query: 61  tactaaactatctcagatttggggcttttataatactcagcctatatagtggttgagagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactaaactatctcagatttggggcttttataatactcagcctatatagtggttgagagg 320

                                                                       
Query: 121 agatggtataagtttaaaaagtcgaaggttttatggtttgtagatttaagactggcaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatggtataagtttaaaaagtcgaaggttttatggtttgtagatttaagactggcaggc 380

                                                                       
Query: 181 agtagcaggtggccatactgtggcaaagtatagtcaccatagcatcttgttaatactgtt 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 agtagcaggtggccatactgtggcaaagtgtagtcaccatagcatcttgttaatactgtt 440

                                                                       
Query: 241 ttcccaaaagtcagagccacagagcaaagggaagaccttcagggacagccgcagaagaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcccaaaagtcagagccacagagcaaagggaagaccttcagggacagccgcagaagaga 500

                                                                       
Query: 301 ggcagacgaggctgtcgcaggttctgagtacctcagctgaaagctagctggagaataata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcagacgaggctgtcgcaggttctgagtacctcagctgaaagctagctggagaataata 560

                                                                       
Query: 361 gtgaggacattctcagagcaggctgtggtcctggattagagaccacacacccacccacct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgaggacattctcagagcaggctgtggtcctggattagagaccacacacccacccacct 620

                                                                       
Query: 421 tcctagccgggtatcagcaccgtgtgggtatacacaatgctgtacaccccatggtgtttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcctagccgggtatcagcaccgtgtgggtatacacaatgctgtacaccccatggtgtttg 680

                                                                       
Query: 481 tactatatggtttccagtgtttttcagcaatgctttcaggatgggtgtgcgtgacagcgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tactatatggtttccagtgtttttcagcaatgctttcaggatgggtgtgcgtgacagcgc 740

                                                                       
Query: 541 catgttctcctaagtccatggatgcagtgttgtcagaatgagagcagggtctaggctaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 catgttctcctaagtccatggatgcagtgttgtcagaatgagagcagggtctaggctaag 800

                                                       
Query: 601 cagcagaagcatggccactatcttagggtccatattgctgcgaa 644
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cagcagaagcatggccactatcttagggtccatattgctgcgaa 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information