Query= MSMg01no481_m04.b1 MSMg01no481_m04.b1 CHROMAT_FILE:
MSMg01no481_m04.b1 PHD_FILE: MSMg01no481_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:30 2005
(643 letters)
>mm_chr2_143934541_143935583
Length = 1043
Score = 487 bits (252), Expect = e-142
Identities = 267/272 (98%)
Strand = Plus / Minus
Query: 372 cctttccaattatttgttactatgtcccaaattattgctcaaactagagacacaaggttt 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 cctttccaattatttgttactatgtcccaaattattgctcaaactagagacacaaggttt 784
Query: 432 cattattttatgtttaatagtatctcttgctattctgggaaatacaacctgctacatgga 491
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 783 cattattttatgtttaatagtatctcttgctgttctgggaaatacaacctgctacatgga 724
Query: 492 gccctgtggagttacagcttctctacagaagtctagtgagaattttatgtatgaaaacag 551
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 723 gccctgtggagttacagcttctctacggaagtctagtgagaattttatgcatgaaaacag 664
Query: 552 agtgataggaaaggaattgaagtcactagccgatggccctgagtgcacactgatagtctg 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 663 agtgataggaaaggaattgaagtcactagccgatggccctgagtgcacactgatagtgtg 604
Query: 612 tttccttttcttgcttttcatacccaaggtgt 643
||||||||||||||| ||||||||||||||||
Sbjct: 603 tttccttttcttgctcttcatacccaaggtgt 572
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_m04.g1 MSMg01no481_m04.g1 CHROMAT_FILE:
MSMg01no481_m04.g1 PHD_FILE: MSMg01no481_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:30 2005
(572 letters)
>mm_chr10_88886843_88887810
Length = 968
Score = 951 bits (492), Expect = 0.0
Identities = 549/570 (96%), Gaps = 6/570 (1%)
Strand = Plus / Minus
Query: 4 cctttgtagcttactctttgaaatggtctatgattgtcattagtttttaaatgtagaaga 63
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 768 cctttgtagcttactctttgaaatggtctatgaatgtcattagtttttaaatgtagaaga 709
Query: 64 catctttcagcgtgctgaagggcagtgtaggactaagaaaaatactgtcagtaccagttt 123
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 708 catctttcagcgtgctgaagggcaatgtaggactaagaaaaatactgtcagtaccagttt 649
Query: 124 gtaggcattgaagtgataattttcttttctctttctttctttttctcttaacatctgctt 183
||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 648 gta-gcattgaagcgataattttcttttc----tctttctttttctcttaacatctgctt 594
Query: 184 gacact-aaagtaattttatgaaagaagtatactattttaaagtacttgggatatttata 242
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gacactcaaagtaattttatgaaagaagtatactattttaaagtacttgggatatttata 534
Query: 243 aaaacaggttggaaatatttcatgatcaattcctttatttctgtagatgttaaattcgaa 302
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 533 aaaacaggttggaaatatttcgtgatcaattcctttatttctgtagatgttaaattagaa 474
Query: 303 tggaggcctttctgttgctttaaacagtaatacattatagccaggcatgttggtgcacac 362
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 473 tggaggtctttctgttgctttaaacagtaatacattatagccaggcatgttggtacacac 414
Query: 363 ctgtacacttacataatctcagaccgagctgtgtatctagtaggacctgttccagaggaa 422
|| ||||||||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct: 413 ctatacacttacataatctcagcccgagctgtgtatcaagcaggacctgttccagaggaa 354
Query: 423 acagattggttttatgcgtataacagatgctattcatacctgaaggaacgactgcccttt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 acagattggttttatgcgtataacagatgctattcatacctgaaggaacgactgcccttt 294
Query: 483 gtgctggtgcagccagggtatgtgctcagaacacgttgtatgttgggttccactgggtcc 542
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 293 gtgctggtgcagccagggtgtgtgctcagaacacgttgtacgttgggttccactgggtcc 234
Query: 543 agagttccttaaggtttctaactctgagga 572
||||||| ||||||||||||||||| ||||
Sbjct: 233 agagttctttaaggtttctaactctaagga 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 968
Length adjustment: 10
Effective length of query: 562
Effective length of database: 958
Effective search space: 538396
Effective search space used: 538396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
