TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAGGACATTCCAGGCTACACAGAGAAACCCTGTTTCAAAATAAACA
AACAAAAACGAAAAAACAAAACAAAAGTTTCAAATACAGACCCAAGATAA
AACGAAATTAAAATTAAAAAAAAAAATTCTTAACTTTACCCTCTGTCCTG
AGTCTATCTATGCCAGCAAATTTCAAATCTTTAGACTGCCCCAGCAACAC
ACCATCGTCAGATGATTCTACATCCTAGACAACTCCAAAGGAACGAGTCC
CAAATGGCCCTGCATTACAACCTGTCCAATGCCAAACATACTGCCTCCTA
ACCCCAGACAGATGGTCTCTCAGAGCCTGGACATCAACAACAAGCCTTTT
CAAATTTAACCAACATTCCAGCTTCTATGGGTCCCTAACAATGGTGCCCT
AGAGTCAGCAGGAAGCAACCAGAGAGAATAATCCCCATTTATCCAACACG
CAACAACAAACAAAAAGGTGAAAAAGAAGGGCCCAAGTAAGGCAAACACA
GACCCAAACATGGCAATCATGGAGCCAACATTACCCTTCTCCCCTTTGCT
AACAAATATTGGATTATATTCCTAAAGCTAACCTCCAAGGTCCATTTCCT
TATTTGGCCACTGACTAATCCCTGAGACAAACCAGCAAAGTCCAAAAATC
AAAATGAATTATTTGGTTAACTTGTTCAATTGGGN

CGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATGAAGCTGTAAAACTGAAGTTGCCTT
GTATACCCCAAGATGATATAGATCTGTGGGATACATGCCTAGGAAAGTTG
CTAACAGAGAGTGGAATCGTTTGTATTTGTAGAACAGAATGGTTTTTATT
TAAATTCTTTTTTTTTGTTGTTGTTTGGTTTTTGTTTTTGTTTTTCCAGA
CAGGGTTTCTATGTATAGCCCTGGATGTCCTGGAACTCACTTTGTAGACC
AGGCTGGCCTCGAACTCATATATCTGCCTGCCTCTGCCCGAGTGCTGGGA
TTAAAGGCATGCACCACCACGCCTGGCTTTATTTAAATTATTAAGAAAAT
ATATTTCATTGTAATAGCATCTTTCATAGTTATTCACTTATTTTCATCCC
AAAACGTGCCTCTGCTCCTAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTTCATTGAGACATG
ACTTCTCTGTGTCTTCTCTGGCTGCTCTGTATCTGCTTTTGTATACCATT
CGTTGTCTCTTACTTCATATATTCCCCTCGCCTATGTCTCTCTTGTGCTG
GTATTTATATGTTTGCGCCCCCCCCTGTTTCTTGCTGTTTATCGCCCTTT
TTGTCTTTTTTCGTCTTTATGCGTATTTTTCTTTTCTN

Query= MSMg01no481_m12.b1 MSMg01no481_m12.b1 CHROMAT_FILE:
MSMg01no481_m12.b1 PHD_FILE: MSMg01no481_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:32 2005
         (642 letters)



>mm_chr2_81644088_81645129
          Length = 1042

 Score = 1017 bits (526), Expect = 0.0
 Identities = 619/668 (92%), Gaps = 32/668 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaggacattcc-aggctacacagagaaaccctgtttcaaaataaaca------- 56
           |||||| ||||||  || |||||||||||||||||||||||||||||||||||       
Sbjct: 866 gaattccaggaca-gccaaggctacacagagaaaccctgtttcaaaataaacaaacaaca 808

                                                                       
Query: 57  -----------------aacaaaaacga-----aaaaacaaaacaaaagtttcaaataca 94
                            ||||||||| |     |||||||||||||||||||||||||| 
Sbjct: 807 acaacaacaacaacaacaacaaaaacaaaaaccaaaaacaaaacaaaagtttcaaatacg 748

                                                                       
Query: 95  gacccaagataaaacgaaattaaaattaaaaaaaaaaattcttaactttaccctctgtcc 154
           ||||||||||||||| |||||||||||  |||||||||| ||||||||||||||||||||
Sbjct: 747 gacccaagataaaacaaaattaaaatt-taaaaaaaaatccttaactttaccctctgtcc 689

                                                                       
Query: 155 tgagtctatctatgccagcaaatttcaaatctttagactgccccagcaacacaccatcgt 214
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 688 tgagtctatctatgccagcaaatttcaaatctacagactgccccagcaacacaccatcgt 629

                                                                       
Query: 215 cagatgattctacatcctagacaactccaaaggaacgagtcccaaatggccctgcattac 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 cagatgattctacatcctagacaactccaaaggaacgagtcccaaatggccctgcattac 569

                                                                       
Query: 275 aacctgtccaatgccaaacatactgcctcctaaccccagacagatggtctctcagagcct 334
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aacctgcccaatgccaaacatactgcctcctaaccccagacagatggtctctcagagcct 509

                                                                       
Query: 335 ggacatcaacaacaagccttttcaaatttaaccaacattccagcttctatgggtccctaa 394
           ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 508 ggacatcaacaacaagccttttcaaatttgaccaacattccagcttccatgggtccctaa 449

                                                                       
Query: 395 caatggtgccctagagtcagcaggaagcaaccagagagaataatccccatttatccaaca 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 caatggtgccctagagtcagcaggaagcaaccagagagaataatccccatttatccaaca 389

                                                                       
Query: 455 cgcaacaacaaacaaaaaggtgaaaaagaagggcccaagtaaggcaaacacagacccaaa 514
            |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 388 tgcaacaacaaacaaaaaggtgaaaaagaagggcccaggtaaggcaaacacagacccaaa 329

                                                                       
Query: 515 catggcaatcatggagccaacattacccttctcccctttgctaacaaatattggattata 574
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 328 catggcaatcatggagccaacattatccttctcccctttgctaacaaatattggattata 269

                                                                       
Query: 575 ttcctaaagctaacctccaaggtccatttccttatttggccactgactaatccctgagac 634
           ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 268 ttcctaaagctaacctccaaggtccatttccttatttggtcaccgactaatccctgagac 209

                   
Query: 635 aaaccagc 642
           ||||||||
Sbjct: 208 aaaccagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)