BAC Information

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BAC

Clone NameMSMg01-482D13
Chromosome2 (Build37)
Map Location 45,135,441 - 45,307,440
singlet/doubletdoublet
Overlap genenone
Upstream geneArhgap15, Gtdc1, Zeb2
Downstream geneLOC100042661, LOC100041337, LOC666604, LOC383690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482D13.T7 (MSMg01no482_d13.b1)MSMg01-482D13.TJ (MSMg01no482_d13.g1)
ACCAG562438AG562439
length713753
length of high quality
(start - end)		679 (35 - 713)677 (77 - 753)
definitionCHROMAT_FILE: MSMg01no482_d13.b1 PHD_FILE: MSMg01no482_d13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:05 2005CHROMAT_FILE: MSMg01no482_d13.g1 PHD_FILE: MSMg01no482_d13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,135,441 - 45,136,115)(45,306,764 - 45,307,440)
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATAAT
ATATGTTTGTAATTAGGCATGCTGTTAAACAGGTTATTAAATAATACATG
AAGACAATGGCTCATGAAATATAGACAGTTCTGAGGTTTATGTACAAGTG
ACACAGAAGCTTGGGGTGAGCCATGGGAGAGTTCTTCTCACTGACTTGGT
GAGCGTACACTTCAGGTAGCTTGGGTAAGATGGGAAGAAGGTCATGTGGT
TGCCTCGCTTGGCGGTAATCTTACAGAAATGCCAACTGAGAACTTCAGGT
TTTTGTCTTTTCTGTTTAGATATGTAGCCATCTTCTGGGACCTGCCAGTC
TTGGAGAGAGAGAAGATCCAGAATTCTACAAGCCGCAAACACACTGTATT
AGAGCAGGCTGAGATCAGATGGCTGGGGAGAAATACAGATGGATGAAGTT
AAGTATGGGCGAAATCAACGTTTCCAGATGCACAGGGTGGACTAAGGGTG
CTGTTCTTTTTGATGAAGAGCAAGGACAAGAAGCATCTCTTGTGAATCAC
TAGGCAGGTGTTTGCTCTCTGGGGAAGTGACAGGAAACTCATCCCTGACC
CGAGGTTACTGGGAGGAAAGAGCTTCTTTTGGTTTTGTTTCTCTGCTTGG
TGTACAAGTCAGTGCCCTATCTAGGGAAGAAGAACGCAGATGATCCTTGG
ATGTCCCCAAGGG

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGTGGTGGAAAAATGCAATATAA
TCAAAATATACACCCTTATTCACTATTGATATATCACATGATGAATAAAC
ATTATCAACTATTTGTGCATTCACATGTGTAGTTAGAATGGAGCAAGGCA
GAGGCAGAGACTTATTTCTGCTAATTCCTGAAACTAGTTGGCAAATATAC
ATCCCACAATATGAATACGCTGCATGGGGCTTCTGGGAATATGCCTTTCT
GTATTGAATATACACACATAAACATAGAAATTGGAATGATCATATGTACA
CATGCATATATATTTTAAATAACATTTCAATGCAGTTTGAAAATACATAT
GTATATACATACTCACACACATGCTGAAATGCCATCCTTCAACATAATTC
ATGATGTGTATTGAAATGTATCAAAGCAGAAACACATTCCAAAAAGAAAT
ACTCACTGGTGCAATTAAATCATAAAGAAGTTTAATTTGTTCACTTAGTA
GTTAAATGTTTATTTTGACATTTTGGTCGGCTGATTCTTTGATGAGAATG
AACCTGGAATGAATTAAGCCTGGTTATAATTTAAGCTCAGTGTGTGAGTT
AACGTGTTTCTTCAGGGAGCATACTTACACTTTGATGATTTACATGAACA
CATGAAAATACCTATTTCTACTGCTTTTAACTTGAAACCTGAACATATTC
ATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_d13.b1 MSMg01no482_d13.b1 CHROMAT_FILE:
MSMg01no482_d13.b1 PHD_FILE: MSMg01no482_d13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:05 2005
         (679 letters)



>mm_chr2_45135237_45136315
          Length = 1079

 Score = 1266 bits (655), Expect = 0.0
 Identities = 670/675 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctataatatatgtttgtaattaggcatgctgttaaacaggttattaaataataca 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctataataaatgtttgtaattaggcatgctgttaaacaggttattaaataataca 264

                                                                       
Query: 65  tgaagacaatggctcatgaaatatagacagttctgaggtttatgtacaagtgacacagaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgaagacaatggctcatgaaatatagacagttctgaggtttatgtacaagtgacacagaa 324

                                                                       
Query: 125 gcttggggtgagccatgggagagttcttctcactgacttggtgagcgtacacttcaggta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcttggggtgagccatgggagagttcttctcactgacttggtgagcgtacacttcaggta 384

                                                                       
Query: 185 gcttgggtaagatgggaagaaggtcatgtggttgcctcgcttggcggtaatcttacagaa 244
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 385 gcttgggtaagatgggaagaaggttatgtggttgcctcgcttggcggtaatcttacagaa 444

                                                                       
Query: 245 atgccaactgagaacttcaggtttttgtcttttctgtttagatatgtagccatcttctgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgccaactgagaacttcaggtttttgtcttttctgtttagatatgtagccatcttctgg 504

                                                                       
Query: 305 gacctgccagtcttggagagagagaagatccagaattctacaagccgcaaacacactgta 364
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 505 gacctgccagtcttggagagagagaagatccagaattctataagccgcaaacacactgta 564

                                                                       
Query: 365 ttagagcaggctgagatcagatggctggggagaaatacagatggatgaagttaagtatgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 565 ttagagcaggctgagatcagatggctggggagaaatacagatggatggagttaagtatgg 624

                                                                       
Query: 425 gcgaaatcaacgtttccagatgcacagggtggactaagggtgctgttctttttgatgaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcgaaatcaacgtttccagatgcacagggtggactaagggtgctgttctttttgatgaag 684

                                                                       
Query: 485 agcaaggacaagaagcatctcttgtgaatcactaggcaggtgtttgctctctggggaagt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agcaaggacaagaagcatctcttgtgaatcactaggcaggtgtttgctctctggggaagt 744

                                                                       
Query: 545 gacaggaaactcatccctgacccgaggttactgggaggaaagagcttcttttggttttgt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gacaggaaactcatccctgacccgaggttactgggaggaaagagcttcttttggttttgt 804

                                                                       
Query: 605 ttctctgcttggtgtacaagtcagtgccctatctagggaagaagaacgcagatgatcctt 664
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 805 ttctctgcttggtgtacaagtcagtgccctgtctagggaagaagaacgcagatgatcctt 864

                          
Query: 665 ggatgtccccaaggg 679
           |||||||||||||||
Sbjct: 865 ggatgtccccaaggg 879


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no482_d13.g1 MSMg01no482_d13.g1 CHROMAT_FILE:
MSMg01no482_d13.g1 PHD_FILE: MSMg01no482_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:05 2005
         (677 letters)



>mm_chr2_45306564_45307640
          Length = 1077

 Score = 1309 bits (677), Expect = 0.0
 Identities = 677/677 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtggtggaaaaatgcaatataatcaaaatatacacccttattcactattgatatatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 cagtggtggaaaaatgcaatataatcaaaatatacacccttattcactattgatatatca 818

                                                                       
Query: 61  catgatgaataaacattatcaactatttgtgcattcacatgtgtagttagaatggagcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 catgatgaataaacattatcaactatttgtgcattcacatgtgtagttagaatggagcaa 758

                                                                       
Query: 121 ggcagaggcagagacttatttctgctaattcctgaaactagttggcaaatatacatccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ggcagaggcagagacttatttctgctaattcctgaaactagttggcaaatatacatccca 698

                                                                       
Query: 181 caatatgaatacgctgcatggggcttctgggaatatgcctttctgtattgaatatacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 caatatgaatacgctgcatggggcttctgggaatatgcctttctgtattgaatatacaca 638

                                                                       
Query: 241 cataaacatagaaattggaatgatcatatgtacacatgcatatatattttaaataacatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 cataaacatagaaattggaatgatcatatgtacacatgcatatatattttaaataacatt 578

                                                                       
Query: 301 tcaatgcagtttgaaaatacatatgtatatacatactcacacacatgctgaaatgccatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tcaatgcagtttgaaaatacatatgtatatacatactcacacacatgctgaaatgccatc 518

                                                                       
Query: 361 cttcaacataattcatgatgtgtattgaaatgtatcaaagcagaaacacattccaaaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cttcaacataattcatgatgtgtattgaaatgtatcaaagcagaaacacattccaaaaag 458

                                                                       
Query: 421 aaatactcactggtgcaattaaatcataaagaagtttaatttgttcacttagtagttaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aaatactcactggtgcaattaaatcataaagaagtttaatttgttcacttagtagttaaa 398

                                                                       
Query: 481 tgtttattttgacattttggtcggctgattctttgatgagaatgaacctggaatgaatta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tgtttattttgacattttggtcggctgattctttgatgagaatgaacctggaatgaatta 338

                                                                       
Query: 541 agcctggttataatttaagctcagtgtgtgagttaacgtgtttcttcagggagcatactt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 agcctggttataatttaagctcagtgtgtgagttaacgtgtttcttcagggagcatactt 278

                                                                       
Query: 601 acactttgatgatttacatgaacacatgaaaatacctatttctactgcttttaacttgaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 acactttgatgatttacatgaacacatgaaaatacctatttctactgcttttaacttgaa 218

                            
Query: 661 acctgaacatattcatg 677
           |||||||||||||||||
Sbjct: 217 acctgaacatattcatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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