BAC Information

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BAC

Clone NameMSMg01-482K21
Chromosome2 (Build37)
Map Location 68,458,704 - 68,459,304
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621171, LOC227995, B3galt1, Stk39, LOC100039683, Gm1323, 4933409G03Rik
Downstream gene4932414N04Rik, LOC667443, Lass6, Nostrin, Spc25, G6pc2, Abcb11, Dhrs9, Lrp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482K21.T7 (MSMg01no482_k21.b1)MSMg01-482K21.TJ (MSMg01no482_k21.g1)
ACCAG562787AG562788
length720716
length of high quality
(start - end)
602 (73 - 674)246 (49 - 294)
definitionCHROMAT_FILE: MSMg01no482_k21.b1 PHD_FILE: MSMg01no482_k21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:38 2005CHROMAT_FILE: MSMg01no482_k21.g1 PHD_FILE: MSMg01no482_k21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXAATACAAGAGGAGGGGCNGGAATTCA
CTAGGGGTACCCAAATATGCAATACACACACACAAGCACACACGCACACA
CATACACCACTGAATAAAAAACAACACCAAAGGAAAACATCATAGTATTT
ATAAAGTAGTATATTGCATGATTTGTTATCACTTATGTGGTTATATGACC
GATGGAGGACAATCCAGATTCATAAGTTAGAACACAGATTAGATGCAGAT
AACTAAGACAATGATGCACCTATAGAATTAAGGTGGACATGCTTTTAAAG
ATGCAGGATTTTCCTGTTTGGTCAGGACGATTTAAATATGAGCGATAAAG
TGAAATTCATTTACTTATTTATAATGATTGTATTTCATTTTAAGTAGTAT
CTATTGTTTTATTGTTACTATTTAGATGTCATTAGTCATAATGATCTATA
TTTAATTGAATTGAATTTTAAAACAAATACCATATGATCTTTACTGATTT
ACAAACTCTTGAGAAGTTAGTTGGTATACAACATAATATCTAGGAAACTC
ATATTTTATCATACTGAAGTGAAATCTATGGGAATATACTTATGTCCAGT
AGAATTATAATGGAAATTCTTAAGATTCAGTGTCTTGAGTTGTTCAAGGA
GGCTAACGGGAAATTTGTTCTCAGTCTTCTTAAGAGATCGATAACAGTGC
GCATTTGTAAAATTTTAAGA
GGGGGCTGCAAAAAAGGGGGANNNANANAANGCCTGTCAAAAAAAGGGCT
CCTCTCTCCTTACTCAGAGAAAAGGTCTGCAAACGAGGGACACAGAATCC
CAGAAATCCCGGTGGACAGTACCTGGAACTGTGCTGTCTAGCCTCCTGAA
CTATGGAAGTAAATTTTAGTTTGTGCTTGTTACAGCAGCCCCAGAACACT
GACACAAAGCCATTCAATGTCTATTCTTATCCACCTCTGCCACTGACACC
TGTGGTGAACGCCATGCTAATTACAAGTTCTGACCTAATTAAGTCTATTA
TTAGAGGCAAGAATCACCTGAAGTGCCTTTGGTAAATCACTACAGTTTCC
ATATCATAGCTTAGCAAGATCTTTTAAAATGAGGCTAGACGAATGTCTTA
GTCACTGTTCTATTACTGTGAAGGGAGGAACACATGACCAAGGCAATGCT
TAAAAAGAAAGCATTTAATTGGGGGATTGCTTATGATTAAGAAACTGAGA
ACCATGACAGCGAGCATTAGCTGAGAGCTTTACATCCTGATCTGTAAGCA
GCAAGCAAAGGTGGATTGGGGAGGGGGAGGGGTAAGGGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTNTNNTT
NNTGNNGNNNNNTNTTTTTNNTNNTTTTNGNTTNNNNNTGTGGTTTTTTT
TTTTTTGTTTTCNTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_k21.b1 MSMg01no482_k21.b1 CHROMAT_FILE:
MSMg01no482_k21.b1 PHD_FILE: MSMg01no482_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:38 2005
         (602 letters)



>mm_chr2_68458469_68459469
          Length = 1001

 Score = 1125 bits (582), Expect = 0.0
 Identities = 597/602 (99%), Gaps = 1/602 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacacacacacaagcacacacgcacacacatacaccactgaataaaaaacaacaccaaag 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 836 tacacacacacaagcacacacgcacacacatacaccactgaat-aaaaacaacaccaaag 778

                                                                       
Query: 61  gaaaacatcatagtatttataaagtagtatattgcatgatttgttatcacttatgtggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 gaaaacatcatagtatttataaagtagtatattgcatgatttgttatcacttatgtggtt 718

                                                                       
Query: 121 atatgaccgatggaggacaatccagattcataagttagaacacagattagatgcagataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 atatgaccgatggaggacaatccagattcataagttagaacacagattagatgcagataa 658

                                                                       
Query: 181 ctaagacaatgatgcacctatagaattaaggtggacatgcttttaaagatgcaggatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ctaagacaatgatgcacctatagaattaaggtggacatgcttttaaagatgcaggatttt 598

                                                                       
Query: 241 cctgtttggtcaggacgatttaaatatgagcgataaagtgaaattcatttacttatttat 300
           |||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 597 cctgtttgctcaggacgatttaaatatgagggataaagtgaaattcatttatttatttat 538

                                                                       
Query: 301 aatgattgtatttcattttaagtagtatctattgttttattgttactatttagatgtcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aatgattgtatttcattttaagtagtatctattgttttattgttactatttagatgtcat 478

                                                                       
Query: 361 tagtcataatgatctatatttaattgaattgaattttaaaacaaataccatatgatcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tagtcataatgatctatatttaattgaattgaattttaaaacaaataccatatgatcttt 418

                                                                       
Query: 421 actgatttacaaactcttgagaagttagttggtatacaacataatatctaggaaactcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 actgatttacaaactcttgagaagttagttggtatacaacataatatctaggaaactcat 358

                                                                       
Query: 481 attttatcatactgaagtgaaatctatgggaatatacttatgtccagtagaattataatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 attttatcatactgaagtgaaatctatgggaatatacttatgtccagtagaattataatg 298

                                                                       
Query: 541 gaaattcttaagattcagtgtcttgagttgttcaaggaggctaacgggaaatttgttctc 600
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gaaattcttaagattcaatgtcttgagttgttcaaggaggctaacgggaaatttgttctc 238

             
Query: 601 ag 602
           ||
Sbjct: 237 ag 236


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1001
Length adjustment: 10
Effective length of query: 592
Effective length of database: 991
Effective search space:   586672
Effective search space used:   586672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)