Query= MSMg01no482_l11.b1 MSMg01no482_l11.b1 CHROMAT_FILE:
MSMg01no482_l11.b1 PHD_FILE: MSMg01no482_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:41 2005
(244 letters)
>mm_chr2_158873209_158873854
Length = 646
Score = 431 bits (223), Expect = e-125
Identities = 239/245 (97%), Gaps = 2/245 (0%)
Strand = Plus / Plus
Query: 1 tacctcttcttaacttagaagacacttaattcttccaaatagtacacaatggctggatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacctcttcttaacttagaagacacttaattcttccaaatagtacacaatggctggatga 260
Query: 61 ttctagtattggcacactattgtcaaactaatgactttccatgaaaaatata--gtcttc 118
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 ttctagtattgacacactattgtcaaactaatgactttccatgaaaaatatattgtcttc 320
Query: 119 atgaaatctatactttaggtatgtgtagcttgcagcctatgaggtagacacggggaaatt 178
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaaatctatactttaggtatgcatagcttgcagcctatgaggtagacacggggaaatt 380
Query: 179 ctcatggaatcaatggaagatgccatttggatagaaaagtcatggagggggaggtatgaa 238
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 ctcatggaatcaatggaagatgccatttggatagaaaagtcgtggagggggaggtatgaa 440
Query: 239 gagtg 243
|||||
Sbjct: 441 gagtg 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 646
Length adjustment: 9
Effective length of query: 235
Effective length of database: 637
Effective search space: 149695
Effective search space used: 149695
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no482_l11.g1 MSMg01no482_l11.g1 CHROMAT_FILE:
MSMg01no482_l11.g1 PHD_FILE: MSMg01no482_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:41 2005
(657 letters)
>mm_chr2_159028946_159030002
Length = 1057
Score = 1247 bits (645), Expect = 0.0
Identities = 654/657 (99%)
Strand = Plus / Minus
Query: 1 actggtcaaataaagaggatgaactaacaattcttatgggccagtaaaagtcattgtccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 actggtcaaataaagaggatgaactaacaattcttatgggccagtaaaagtcattgtccc 715
Query: 61 acccacatacacatagttgtggatacacagggcatggttttataacagaaatatatatac 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 acccatatacacatagttgtggatacacagggcatggttttataacagaaatatatatac 655
Query: 121 acttgaattttcaatttctttttgcatatggccataagtcatcctgaccacacagcaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 acttgaattttcaatttctttttgcatatggccataagtcatcctgaccacacagcaaaa 595
Query: 181 gacttaggaccattttgtttgtggctgcccacaacatcgagtcatgtctgttaatagacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gacttaggaccattttgtttgtggctgcccacaacatcgagtcatgtctgttaatagacc 535
Query: 241 ctgagtgatttctactgacaactgcagttctgaaagatttactactcagttagtatgtaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ctgagtgatttctactgacaactgcagttctgaaagatttactactcagttagtatgtaa 475
Query: 301 tgagatcgcctctttccctttccctgtgtaacaccagccaacacatgttactttctctca 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 474 tgagatcgcctctttccctttccctgtgtaacaccagccaacgcatgttactttctctca 415
Query: 361 ctcaccttttctccttttgattcaaaaggatcagagactttgaaggtcgccccattggtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ctcaccttttctccttttgattcaaaaggatcagagactttgaaggtcgccccattggtt 355
Query: 421 gctttctgaatcctgaatcagacgtttcctctctatttttatatctaaggagtagtatag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gctttctgaatcctgaatcagacgtttcctctctatttttatatctaaggagtagtatag 295
Query: 481 ccttcctctgtggctgcgtgggtgggatggaagacccaaagggaccaagttcttagagcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ccttcctctgtggctgcgtgggtgggatggaagacccaaagggaccaagttcttagagcc 235
Query: 541 gctctccagaaatccagaggactctacttgttctagttttctctatgttactttggtaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 gctctccagaaatccagaggactctacttgttctagttttctctatgttactttggtaaa 175
Query: 601 atactatgacccaaagccaacttagagggggacagtggcttacacttgcaggtcata 657
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 174 atactatgacccaaagccaacttagagggggacagtagcttacacttgcaggtcata 118
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
